ENSDARG00000063054


Danio rerio

Features
Gene ID: ENSDARG00000063054
  
Biological name :shank3b
  
Synonyms : SH3 and multiple ankyrin repeat domains 3b / shank3b
  
Possible biological names infered from orthology : Q4ACU6 / SH3 and multiple ankyrin repeat domains 3 / SH3 and multiple ankyrin repeat domains protein 3 / SHANK3
  
Species: Danio rerio
  
Chr. number: 4
Strand: -1
Band:
Gene start: 9555280
Gene end: 9586713
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000153375
Ensembl peptide - ENSDARP00000086242
Ensembl peptide - ENSDARP00000116758
Ensembl peptide - ENSDARP00000125192
Ensembl peptide - ENSDARP00000145172
NCBI entrez gene - 566152     See in Manteia.
RefSeq - XM_021471520
swissprot - F1Q560
swissprot - F1R0Q7
swissprot - H0WEB5
ZFIN ID - ZDB-GENE-041210-74
Ensembl - ENSDARG00000063054
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000039165Gallus gallus
 ENSGALG00000033919Gallus gallus
 SHANK3ENSG00000251322Homo sapiens
 Q4ACU6ENSMUSG00000022623Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
shank3a / SH3 and multiple ankyrin repeat domains 3a / SHANK3* / Q4ACU6* / SH3 and multiple ankyrin repeat domains 3* / SH3 and multiple ankyrin repeat domains protein 3 *ENSDARG0000006333252
shank2 / SH3 and multiple ankyrin repeat domains 2 / Q80Z38* / Q9UPX8* / SH3 and multiple ankyrin repeat domains protein 2 *ENSDARG0000006232541
shank1 / SH3 and multiple ankyrin repeat domains 1 / D3YZU1* / Q9Y566* / SH3 and multiple ankyrin repeat domains protein 1 *ENSDARG0000006053926
si:ch1073-450f2.1ENSDARG0000010244324


Protein motifs (from Interpro)
Interpro ID Name
 IPR001452  SH3 domain
 IPR001478  PDZ domain
 IPR001660  Sterile alpha motif domain
 IPR002110  Ankyrin repeat
 IPR013761  Sterile alpha motif/pointed domain superfamily
 IPR020683  Ankyrin repeat-containing domain
 IPR032425  Talin, N-terminal F0 domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000151 pronephros pronephros cystic , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
Show

 ZFA:0001115 trunk trunk decreased size , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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