ENSG00000284862


Homo sapiens

Features
Gene ID: ENSG00000284862
  
Biological name :CCDC39
  
Synonyms : CCDC39 / coiled-coil domain containing 39 / Q9UFE4
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: -1
Band: q26.33
Gene start: 180602858
Gene end: 180679500
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSP00000418482
Ensembl peptide - ENSP00000420025
Ensembl peptide - ENSP00000405708
NCBI entrez gene - 339829     See in Manteia.
OMIM - 613798
RefSeq - NM_181426
RefSeq Peptide - NP_852091
swissprot - Q9UFE4
swissprot - H7C4X6
swissprot - H7C5I6
Ensembl - ENSG00000284862
  
Related genetic diseases (OMIM): 613807 - Ciliary dyskinesia, primary, 14, 613807
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CABZ01055306.1ENSDARG00000100981Danio rerio
 ENSGALG00000021855Gallus gallus
 Ccdc39ENSMUSG00000027676Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CCDC39 / coiled-coil domain containing 39ENSG000001450759


Protein motifs (from Interpro)
Interpro ID Name
 IPR033290  Coiled-coil domain-containing protein 39


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001947 heart looping IMP
 biological_processGO:0003341 cilium movement IMP
 biological_processGO:0003356 regulation of cilium beat frequency IMP
 biological_processGO:0030317 flagellated sperm motility IMP
 biological_processGO:0030324 lung development IMP
 biological_processGO:0035469 determination of pancreatic left/right asymmetry IMP
 biological_processGO:0036159 inner dynein arm assembly IMP
 biological_processGO:0044458 motile cilium assembly IMP
 biological_processGO:0060285 cilium-dependent cell motility IMP
 biological_processGO:0060287 epithelial cilium movement involved in determination of left/right asymmetry IMP
 biological_processGO:0070286 axonemal dynein complex assembly IMP
 biological_processGO:0071907 determination of digestive tract left/right asymmetry IMP
 biological_processGO:0071910 determination of liver left/right asymmetry IMP
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005929 cilium IEA
 cellular_componentGO:0005930 axoneme IDA
 cellular_componentGO:0042995 cell projection IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000388 Otitis media 
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 HP:0000789 Infertility 
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 HP:0001696 Situs inversus "A left-right reversal (or "mirror reflection") of the anatomical location of the major thoracic and abdominal organs." [HPO:curators]
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 HP:0001748 Polysplenia "Polysplenia is a congenital disease manifested by multiple small accessory spleens." [HPO:curators]
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 HP:0002110 Bronchiectasis 
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 HP:0002205 Recurrent respiratory infections 
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 HP:0011109 Chronic sinusitis "A chronic form of `sinusitis` (HP:0000246)." [HPO:probinson]
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 HP:0012257 Absent inner dynein arms "Absence of the outer dynein arms of respiratory motile cilia, which normally are situated within the peripheral microtubules of motile cilia. This feature is usually appreciated by electron microscopy." [HPO:probinson, pmid:19606528]
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 HP:0012258 Abnormal axonemal organization of motile ciliasss "Abnormal arrangement of the structures of the axoneme, which is the cytoskeletal structure that forms the inner core of the motile cilium and displays a canonical 9 + 2 microtubular pattern of motile cilia studded with dynein arms." [HPO:probinson, pmid:19606528]
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 HP:0012262 Abnormal ciliary motility "Any anomaly of the normal motility of motile cilia. Evaluation of ciliary beat frequency and ciliary beat pattern requires high-speed videomicroscopy of freshly obtained ciliary biopsies that are maintained in culture media under controlled conditions." [HPO:probinson, pmid:19606528, pmid:20301301]
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 HP:0012265 Ciliary dyskinesia "A deviation from the normally well coordinated pattern of intracellular and intercellular synchrony of motile cilia. Dyskinetic cilia usually beat out of synchrony relative to neighboring cilia." [HPO:probinson, pmid:19606528]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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