ENSGALG00000000137


Gallus gallus

Features
Gene ID: ENSGALG00000000137
  
Biological name :SNRPE
  
Synonyms : P62303 / Small nuclear ribonucleoprotein E / SNRPE
  
Possible biological names infered from orthology : P62304 / small nuclear ribonucleoprotein polypeptide E
  
Species: Gallus gallus
  
Chr. number: 26
Strand: 1
Band:
Gene start: 1667873
Gene end: 1670176
  
Corresponding Affymetrix probe sets: Gga.3409.2.S1_a_at (Chicken Array)   Gga.3409.3.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000058617
Ensembl peptide - ENSGALP00000000189
NCBI entrez gene - 396180     See in Manteia.
RefSeq - NM_205250
RefSeq Peptide - NP_990581
swissprot - P62303
swissprot - A0A1L1RIP2
Ensembl - ENSGALG00000000137
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snrpeENSDARG00000033175Danio rerio
 SNRPEENSG00000182004Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily
 IPR027078  Small nuclear ribonucleoprotein E


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000387 spliceosomal snRNP assembly IEA
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0042633 hair cycle IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005682 U5 snRNP IBA
 cellular_componentGO:0005683 U7 snRNP IEA
 cellular_componentGO:0005685 U1 snRNP IEA
 cellular_componentGO:0005686 U2 snRNP IBA
 cellular_componentGO:0005687 U4 snRNP IEA
 cellular_componentGO:0005689 U12-type spliceosomal complex IEA
 cellular_componentGO:0005697 telomerase holoenzyme complex IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol ISS
 cellular_componentGO:0034709 methylosome IEA
 cellular_componentGO:0034715 pICln-Sm protein complex IEA
 cellular_componentGO:0034719 SMN-Sm protein complex IEA
 cellular_componentGO:0046540 U4/U6 x U5 tri-snRNP complex IBA
 cellular_componentGO:0071007 U2-type catalytic step 2 spliceosome IEA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
SLBP independent Processing of Histone Pre-mRNAs
snRNP Assembly
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway
SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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