ENSDARG00000033175


Danio rerio

Features
Gene ID: ENSDARG00000033175
  
Biological name :snrpe
  
Synonyms : Q7ZUG0 / small nuclear ribonucleoprotein polypeptide E / snrpe
  
Possible biological names infered from orthology : P62304 / P62305 / small nuclear ribonucleoprotein E
  
Species: Danio rerio
  
Chr. number: 11
Strand: 1
Band:
Gene start: 37720552
Gene end: 37726201
  
Corresponding Affymetrix probe sets: Dr.16025.1.S1_at (Zebrafish Array)   NM_201004_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000050295
Ensembl peptide - ENSDARP00000142199
Ensembl peptide - ENSDARP00000142173
NCBI entrez gene - 393979     See in Manteia.
RefSeq - NM_201004
RefSeq Peptide - NP_957298
swissprot - A0A140LG21
swissprot - A0A140LFZ7
swissprot - Q7ZUG0
ZFIN ID - ZDB-GENE-040426-1112
Ensembl - ENSDARG00000033175
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SNRPEENSGALG00000000137Gallus gallus
 SNRPEENSG00000182004Homo sapiens
 SnrpeENSMUSG00000090553Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily
 IPR027078  Small nuclear ribonucleoprotein E


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000387 spliceosomal snRNP assembly IBA
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005682 U5 snRNP IBA
 cellular_componentGO:0005685 U1 snRNP ISS
 cellular_componentGO:0005686 U2 snRNP IBA
 cellular_componentGO:0005687 U4 snRNP ISS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol ISS
 cellular_componentGO:0034709 methylosome ISS
 cellular_componentGO:0034715 pICln-Sm protein complex ISS
 cellular_componentGO:0034719 SMN-Sm protein complex ISS
 cellular_componentGO:0046540 U4/U6 x U5 tri-snRNP complex IBA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
snRNP Assembly
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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