ENSMUSG00000090553


Mus musculus

Features
Gene ID: ENSMUSG00000090553
  
Biological name :Snrpe
  
Synonyms : P62305 / small nuclear ribonucleoprotein E / Snrpe
  
Possible biological names infered from orthology :
  
Species: Mus musculus
  
Chr. number: 1
Strand: -1
Band: E4
Gene start: 133603871
Gene end: 133610291
  
Corresponding Affymetrix probe sets: 10357808 (MoGene1.0st)   1451294_s_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000128400
Ensembl peptide - ENSMUSP00000133244
Ensembl peptide - ENSMUSP00000132543
Ensembl peptide - ENSMUSP00000132376
Ensembl peptide - ENSMUSP00000131061
Ensembl peptide - ENSMUSP00000127164
NCBI entrez gene - 20643     See in Manteia.
MGI - MGI:98346
RefSeq - NM_009227
RefSeq Peptide - NP_033253
swissprot - E9PXQ9
swissprot - E9Q4F4
swissprot - P62305
swissprot - E9Q0W8
swissprot - E9PZG9
Ensembl - ENSMUSG00000090553
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snrpeENSDARG00000033175Danio rerio


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily
 IPR027078  Small nuclear ribonucleoprotein E


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000387 spliceosomal snRNP assembly ISS
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0042633 hair cycle ISS
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005682 U5 snRNP IBA
 cellular_componentGO:0005683 U7 snRNP ISS
 cellular_componentGO:0005685 U1 snRNP ISS
 cellular_componentGO:0005686 U2 snRNP IBA
 cellular_componentGO:0005687 U4 snRNP IBA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol ISS
 cellular_componentGO:0034709 methylosome ISS
 cellular_componentGO:0034715 pICln-Sm protein complex ISS
 cellular_componentGO:0034719 SMN-Sm protein complex ISS
 cellular_componentGO:0046540 U4/U6 x U5 tri-snRNP complex IBA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001156 abnormal spermatogenesis "incomplete maturation or aberrant formation of the male gametes" [J:58959]
Show

Allelic Composition: Apctm1.1Alew/Apctm1.1Alew
Genetic Background: B6.129-Apctm1.1Alew

 MP:0004852 decreased testis weight "reduced average weight of the male reproductive glands" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Apctm1.1Alew/Apctm1.1Alew
Genetic Background: B6.129-Apctm1.1Alew

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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