ENSGALG00000000787


Gallus gallus

Features
Gene ID: ENSGALG00000000787
  
Biological name :DHX38
  
Synonyms : DEAH-box helicase 38 / DHX38
  
Possible biological names infered from orthology : Q92620
  
Species: Gallus gallus
  
Chr. number: 11
Strand: -1
Band:
Gene start: 19949492
Gene end: 19959954
  
Corresponding Affymetrix probe sets: Gga.12336.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000037931
NCBI entrez gene - 415875     See in Manteia.
RefSeq - NM_001030582
RefSeq - XM_015292599
RefSeq Peptide - NP_001025753
swissprot - Q5ZLE8
Ensembl - ENSGALG00000000787
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 dhx38ENSDARG00000100013Danio rerio
 DHX38ENSG00000140829Homo sapiens
 Dhx38ENSMUSG00000037993Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
DHX8 / DEAH-box helicase 8 / A2A4P0* / Q14562* / ATP-dependent RNA helicase DHX8 *ENSGALG0000003230536
DHX15 / pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 / O35286* / O43143* / DEAH-box helicase 15*ENSGALG0000001439525
DHX35 / DEAH-box helicase 35 / Q9H5Z1* / probable ATP-dependent RNA helicase DHX35 isoform b *ENSGALG0000000365824
DHX33 / DEAH-box helicase 33 / Q80VY9* / Q9H6R0* / Putative ATP-dependent RNA helicase DHX33 *ENSGALG0000000163023
DHX40 / DEAH-box helicase 40 / Q6PE54* / Q8IX18* / Probable ATP-dependent RNA helicase DHX40 *ENSGALG0000000512622


Protein motifs (from Interpro)
Interpro ID Name
 IPR001650  Helicase, C-terminal
 IPR002464  DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site
 IPR007502  Helicase-associated domain
 IPR011545  DEAD/DEAH box helicase domain
 IPR011709  Domain of unknown function DUF1605
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 cellular_componentGO:0005681 spliceosomal complex IBA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
mRNA Splicing - Major Pathway
mRNA 3-end processing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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