ENSGALG00000002703


Gallus gallus

Features
Gene ID: ENSGALG00000002703
  
Biological name :TFAM
  
Synonyms : TFAM / transcription factor A, mitochondrial
  
Possible biological names infered from orthology : P40630 / Q00059
  
Species: Gallus gallus
  
Chr. number: 6
Strand: -1
Band:
Gene start: 5216875
Gene end: 5221892
  
Corresponding Affymetrix probe sets: Gga.3283.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000063033
Ensembl peptide - ENSGALP00000004251
NCBI entrez gene - 373888     See in Manteia.
RefSeq - XM_015287951
RefSeq - NM_204100
RefSeq - XM_015287950
RefSeq Peptide - NP_989431
swissprot - F1NG46
swissprot - A0A1L1RW12
Ensembl - ENSGALG00000002703
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tfamENSDARG00000063145Danio rerio
 TFAMENSG00000108064Homo sapiens
 TfamENSMUSG00000003923Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR009071  High mobility group box domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006390 mitochondrial transcription IEA
 biological_processGO:0006391 transcription initiation from mitochondrial promoter IEA
 biological_processGO:0033108 mitochondrial respiratory chain complex assembly IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005759 mitochondrial matrix IEA
 cellular_componentGO:0032991 protein-containing complex IEA
 cellular_componentGO:0042645 mitochondrial nucleoid IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0001018 mitochondrial promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0008301 DNA binding, bending IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
Mitochondrial transcription initiation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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