ENSGALG00000003849


Gallus gallus

Features
Gene ID: ENSGALG00000003849
  
Biological name :TRPM1
  
Synonyms : transient receptor potential cation channel subfamily M member 1 / TRPM1
  
Possible biological names infered from orthology : Q2TV84 / Q7Z4N2
  
Species: Gallus gallus
  
Chr. number: 10
Strand: 1
Band:
Gene start: 5621877
Gene end: 5662732
  
Corresponding Affymetrix probe sets: GgaAffx.2399.1.S1_s_at (Chicken Array)   GgaAffx.2399.2.S1_at (Chicken Array)   GgaAffx.2399.3.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000006104
Ensembl peptide - ENSGALP00000049177
Ensembl peptide - ENSGALP00000044665
NCBI entrez gene - 427494     See in Manteia.
RefSeq - XM_015278982
RefSeq - XM_015278983
RefSeq - XM_015278984
RefSeq - XM_015278985
swissprot - A0A1D5NWC6
swissprot - F1NCK1
swissprot - A0A1D5P8X8
Ensembl - ENSGALG00000003849
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trpm1aENSDARG00000011259Danio rerio
 trpm1bENSDARG00000103476Danio rerio
 TRPM1ENSG00000134160Homo sapiens
 Trpm1ENSMUSG00000030523Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TRPM3 / transient receptor potential cation channel subfamily M member 3 / Q9HCF6*ENSGALG0000001512663
TRPM7 / transient receptor potential cation channel subfamily M member 7 / Q923J1* / Q96QT4*ENSGALG0000002345146
TRPM6 / transient receptor potential cation channel subfamily M member 6 / Q8CIR4* / Q9BX84*ENSGALG0000001515441
TRPM2 / transient receptor potential cation channel subfamily M member 2 / O94759* / Q91YD4*ENSGALG0000000563124
TRPM5 / transient receptor potential cation channel subfamily M member 5 / Q9JJH7* / Q9NZQ8*ENSGALG0000000652120
TRPM8 / transient receptor potential cation channel subfamily M member 8 / Q7Z2W7* / Q8R4D5*ENSGALG0000000411620


Protein motifs (from Interpro)
Interpro ID Name
 IPR005821  Ion transport domain
 IPR029588  Transient receptor potential cation channel subfamily M member 1
 IPR032415  TRPM, tetramerisation domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0007216 G-protein coupled glutamate receptor signaling pathway IEA
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0034220 ion transmembrane transport IEA
 biological_processGO:0046548 retinal rod cell development IEA
 biological_processGO:0051262 protein tetramerization IEA
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0060402 calcium ion transport into cytosol IEA
 biological_processGO:0071482 cellular response to light stimulus IEA
 biological_processGO:0098655 cation transmembrane transport IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0035841 new growing cell tip IEA
 molecular_functionGO:0005216 ion channel activity IEA
 molecular_functionGO:0005261 cation channel activity IEA
 molecular_functionGO:0005262 calcium channel activity IEA


Pathways (from Reactome)
Pathway description
TRP channels


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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