ENSGALG00000004831


Gallus gallus

Features
Gene ID: ENSGALG00000004831
  
Biological name :RPS4X
  
Synonyms : 40S ribosomal protein S4 / P47836 / RPS4X
  
Possible biological names infered from orthology : Gm15013 / P62701 / P62702 / ribosomal protein S4, X-linked
  
Species: Gallus gallus
  
Chr. number: 4
Strand: 1
Band:
Gene start: 1903417
Gene end: 1907849
  
Corresponding Affymetrix probe sets: Gga.4045.3.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000052806
Ensembl peptide - ENSGALP00000064508
Ensembl peptide - ENSGALP00000064313
Ensembl peptide - ENSGALP00000063675
Ensembl peptide - ENSGALP00000062444
Ensembl peptide - ENSGALP00000062305
Ensembl peptide - ENSGALP00000007705
Ensembl peptide - ENSGALP00000043692
Ensembl peptide - ENSGALP00000049674
NCBI entrez gene - 396001     See in Manteia.
RefSeq - NM_205108
RefSeq Peptide - NP_990439
swissprot - A0A1L1RUE5
swissprot - A0A1D5PAB4
swissprot - A0A1D5NTN5
swissprot - F1NFC6
swissprot - A0A1L1RZL4
swissprot - P47836
swissprot - A0A1L1RXV4
Ensembl - ENSGALG00000004831
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rps4xENSDARG00000014690Danio rerio
 RPS4XENSG00000198034Homo sapiens
 Gm15013ENSMUSG00000098559Mus musculus
 Rps4xENSMUSG00000031320Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000876  Ribosomal protein S4e
 IPR002942  RNA-binding S4 domain
 IPR005824  KOW
 IPR013843  Ribosomal protein S4e, N-terminal
 IPR013845  Ribosomal protein S4e, central region
 IPR018199  Ribosomal protein S4e, N-terminal, conserved site
 IPR032277  40S ribosomal protein S4, C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006412 translation IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0008284 positive regulation of cell proliferation IEA
 biological_processGO:0045727 positive regulation of translation IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0005844 polysome IEA
 cellular_componentGO:0015935 small ribosomal subunit IEA
 cellular_componentGO:0022627 cytosolic small ribosomal subunit IEA
 cellular_componentGO:0036464 cytoplasmic ribonucleoprotein granule IEA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0003735 structural constituent of ribosome IEA
 molecular_functionGO:0019843 rRNA binding IEA


Pathways (from Reactome)
Pathway description
SRP-dependent cotranslational protein targeting to membrane
Translation initiation complex formation
Formation of a pool of free 40S subunits
Formation of the ternary complex, and subsequently, the 43S complex
Ribosomal scanning and start codon recognition
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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