ENSGALG00000006096


Gallus gallus

Features
Gene ID: ENSGALG00000006096
  
Biological name :RPS13
  
Synonyms : 40S ribosomal protein S13 / Q6ITC7 / RPS13
  
Possible biological names infered from orthology :
  
Species: Gallus gallus
  
Chr. number: 5
Strand: -1
Band:
Gene start: 11741488
Gene end: 11745273
  
Corresponding Affymetrix probe sets: Gga.12646.1.A1_at (Chicken Array)   Gga.12646.1.S1_at (Chicken Array)   Gga.8499.1.S1_s_at (Chicken Array)   Gga.8499.2.S1_at (Chicken Array)   Gga.8499.4.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000009821
Ensembl peptide - ENSGALP00000063670
Ensembl peptide - ENSGALP00000060886
Ensembl peptide - ENSGALP00000054998
Ensembl peptide - ENSGALP00000050901
NCBI entrez gene - 414782     See in Manteia.
RefSeq - NM_001001783
RefSeq Peptide - NP_001001783
swissprot - A0A1D5PQ38
swissprot - A0A1L1RXU9
swissprot - Q6ITC7
swissprot - A0A1D5PDQ6
swissprot - A0A1L1RQ22
Ensembl - ENSGALG00000006096
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rps13ENSDARG00000036298Danio rerio


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000589  Ribosomal protein S15
 IPR009068  S15/NS1, RNA-binding
 IPR012606  Ribosomal protein S13/S15, N-terminal
 IPR023029  Ribosomal protein S15P


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006412 translation IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022627 cytosolic small ribosomal subunit IBA
 molecular_functionGO:0003735 structural constituent of ribosome IEA
 molecular_functionGO:0070181 small ribosomal subunit rRNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr