ENSDARG00000036298


Danio rerio

Features
Gene ID: ENSDARG00000036298
  
Biological name :rps13
  
Synonyms : ribosomal protein S13 / rps13
  
Possible biological names infered from orthology : P62277 / P62301
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 27041315
Gene end: 27044013
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000052729
Ensembl peptide - ENSDARP00000124858
NCBI entrez gene - 415169     See in Manteia.
swissprot - F8W246
swissprot - Q6IMW6
ZFIN ID - ZDB-GENE-040625-52
Ensembl - ENSDARG00000036298
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPS13ENSGALG00000006096Gallus gallus
 RPS13ENSG00000110700Homo sapiens
 Rps13ENSMUSG00000090862Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000589  Ribosomal protein S15
 IPR009068  S15/NS1, RNA-binding
 IPR012606  Ribosomal protein S13/S15, N-terminal
 IPR023029  Ribosomal protein S15P


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006412 translation IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022627 cytosolic small ribosomal subunit IBA
 molecular_functionGO:0003735 structural constituent of ribosome IEA
 molecular_functionGO:0070181 small ribosomal subunit rRNA binding IBA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
SRP-dependent cotranslational protein targeting to membrane
Major pathway of rRNA processing in the nucleolus and cytosol
Translation initiation complex formation
Formation of a pool of free 40S subunits
Formation of the ternary complex, and subsequently, the 43S complex
Ribosomal scanning and start codon recognition
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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