ENSMUSG00000090862


Mus musculus

Features
Gene ID: ENSMUSG00000090862
  
Biological name :Rps13
  
Synonyms : P62301 / ribosomal protein S13 / Rps13
  
Possible biological names infered from orthology : P62277
  
Species: Mus musculus
  
Chr. number: 7
Strand: -1
Band: F1
Gene start: 116331505
Gene end: 116334195
  
Corresponding Affymetrix probe sets: 10565434 (MoGene1.0st)   10567163 (MoGene1.0st)   10567171 (MoGene1.0st)   10573693 (MoGene1.0st)   1415912_a_at (Mouse Genome 430 2.0 Array)   1415913_at (Mouse Genome 430 2.0 Array)   1438794_x_at (Mouse Genome 430 2.0 Array)   1448142_x_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000146272
Ensembl peptide - ENSMUSP00000126294
Ensembl peptide - ENSMUSP00000146136
NCBI entrez gene - 68052     See in Manteia.
MGI - MGI:1915302
RefSeq - NM_026533
RefSeq Peptide - NP_080809
swissprot - A0A0U1RQ71
swissprot - P62301
swissprot - Q5BLJ7
swissprot - Q921R2
Ensembl - ENSMUSG00000090862
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rps13ENSDARG00000036298Danio rerio
 RPS13ENSG00000110700Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000589  Ribosomal protein S15
 IPR009068  S15/NS1, RNA-binding
 IPR012606  Ribosomal protein S13/S15, N-terminal
 IPR023029  Ribosomal protein S15P


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006412 translation IEA
 biological_processGO:0033119 negative regulation of RNA splicing IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022627 cytosolic small ribosomal subunit IEA
 cellular_componentGO:0031012 extracellular matrix ISO
 molecular_functionGO:0003729 mRNA binding IEA
 molecular_functionGO:0003735 structural constituent of ribosome IEA
 molecular_functionGO:0048027 mRNA 5"-UTR binding IEA
 molecular_functionGO:0070181 small ribosomal subunit rRNA binding IBA


Pathways (from Reactome)
Pathway description
Formation of the ternary complex, and subsequently, the 43S complex
Ribosomal scanning and start codon recognition
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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