ENSGALG00000006731


Gallus gallus

Features
Gene ID: ENSGALG00000006731
  
Biological name :TAF3
  
Synonyms : TAF3 / transcription initiation factor TFIID subunit 3
  
Possible biological names infered from orthology : Q5HZG4 / Q5VWG9 / TATA-box binding protein associated factor 3
  
Species: Gallus gallus
  
Chr. number: 1
Strand: 1
Band:
Gene start: 4257754
Gene end: 4370309
  
Corresponding Affymetrix probe sets: Gga.13031.1.S1_at (Chicken Array)   Gga.16755.1.S1_s_at (Chicken Array)   Gga.16755.2.S1_at (Chicken Array)   Gga.8090.1.S1_at (Chicken Array)   Gga.8350.1.S1_s_at (Chicken Array)   GgaAffx.22042.1.S1_at (Chicken Array)   GgaAffx.22042.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000010875
NCBI entrez gene - 419107     See in Manteia.
RefSeq - NM_001030841
RefSeq - XM_015293553
RefSeq - XM_015293603
RefSeq Peptide - NP_001026012
swissprot - F1NZW0
Ensembl - ENSGALG00000006731
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 taf3ENSDARG00000045513Danio rerio
 TAF3ENSG00000165632Homo sapiens
 Taf3ENSMUSG00000025782Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001965  Zinc finger, PHD-type
 IPR006565  Bromodomain associated domain
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR019786  Zinc finger, PHD-type, conserved site
 IPR019787  Zinc finger, PHD-finger


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0043433 negative regulation of DNA-binding transcription factor activity IEA
 biological_processGO:0051457 maintenance of protein location in nucleus IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005669 transcription factor TFIID complex IEA
 cellular_componentGO:0031965 nuclear membrane IEA
 molecular_functionGO:0002039 p53 binding IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
RNA Polymerase II Pre-transcription Events
RNA Polymerase II Promoter Escape
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Initiation And Promoter Clearance


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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