ENSGALG00000013733


Gallus gallus

Features
Gene ID: ENSGALG00000013733
  
Biological name :GTF2H5
  
Synonyms : General transcription factor IIH subunit 5 / GTF2H5 / Q5ZKH0
  
Possible biological names infered from orthology : Q6ZYL4 / Q8K2X8 / ral transcription factor IIH subunit 5
  
Species: Gallus gallus
  
Chr. number: 3
Strand: 1
Band:
Gene start: 52024948
Gene end: 52029456
  
Corresponding Affymetrix probe sets: GgaAffx.12217.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000022280
Ensembl peptide - ENSGALP00000048367
Ensembl peptide - ENSGALP00000062129
Ensembl peptide - ENSGALP00000062179
NCBI entrez gene - 769754     See in Manteia.
RefSeq - XM_015284126
RefSeq - NM_001097535
RefSeq - XM_015284124
RefSeq - XM_015284125
RefSeq Peptide - NP_001091004
swissprot - Q5ZKH0
Ensembl - ENSGALG00000013733
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gtf2h5ENSDARG00000056099Danio rerio
 GTF2H5ENSG00000272047Homo sapiens
 Gtf2h5ENSMUSG00000034345Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR009400  TFIIH subunit TTDA/Tfb5


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006281 DNA repair TAS
 biological_processGO:0006289 nucleotide-excision repair IEA
 biological_processGO:0006294 nucleotide-excision repair, preincision complex assembly IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006362 transcription elongation from RNA polymerase I promoter IEA
 biological_processGO:0006364 rRNA processing IEA
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 biological_processGO:0071480 cellular response to gamma radiation IEA
 cellular_componentGO:0000439 core TFIIH complex IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005669 transcription factor TFIID complex IEA
 cellular_componentGO:0005730 nucleolus IEA
 molecular_functionGO:0000182 rDNA binding IEA


Pathways (from Reactome)
Pathway description
Formation of the Early Elongation Complex
Nucleotide Excision Repair
Formation of Incision Complex in GG-NER
Dual Incision in GG-NER
RNA Polymerase II Pre-transcription Events
Formation of TC-NER Pre-Incision Complex
Dual incision in TC-NER
Gap-filling DNA repair synthesis and ligation in TC-NER
TP53 Regulates Transcription of DNA Repair Genes
mRNA Capping
RNA Polymerase I Transcription Initiation
RNA Polymerase I Promoter Escape
RNA Polymerase II Promoter Escape
RNA Polymerase I Chain Elongation
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase I Transcription Termination
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Elongation
RNA Polymerase II Transcription Initiation And Promoter Clearance
RNA Pol II CTD phosphorylation and interaction with CE


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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