ENSGALG00000013943


Gallus gallus

Features
Gene ID: ENSGALG00000013943
  
Biological name :
  
Synonyms :
  
Possible biological names infered from orthology : AC058822.1 / factor interacting with PAPOLA and CPSF1 / FIP1L1 / Pre-mRNA 3-end-processing factor FIP1 / Q6UN15 / Q9D824
  
Species: Gallus gallus
  
Chr. number: 4
Strand: -1
Band:
Gene start: 66133547
Gene end: 66170739
  
Corresponding Affymetrix probe sets: GgaAffx.12153.1.S1_at (Chicken Array)   GgaAffx.24313.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000022557
Ensembl peptide - ENSGALP00000058270
NCBI entrez gene - 422754     See in Manteia.
RefSeq - XM_015285533
RefSeq - XM_015285534
RefSeq - XM_015285535
swissprot - E1BWP4
swissprot - A0A1D5PZ61
Ensembl - ENSGALG00000013943
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 fip1l1aENSDARG00000043328Danio rerio
 fip1l1bENSDARG00000070431Danio rerio
 AC058822.1ENSG00000282278Homo sapiens
 FIP1L1ENSG00000145216Homo sapiens
 Fip1l1ENSMUSG00000029227Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ENSGALG0000000768351


Protein motifs (from Interpro)
Interpro ID Name
 IPR007854  Pre-mRNA polyadenylation factor Fip1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006378 mRNA polyadenylation IBA
 biological_processGO:0098789 pre-mRNA cleavage required for polyadenylation IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005847 mRNA cleavage and polyadenylation specificity factor complex IBA
 molecular_functionGO:0003723 RNA binding IBA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
mRNA Splicing - Major Pathway
mRNA 3-end processing
Processing of Intronless Pre-mRNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr