ENSGALG00000016050


Gallus gallus

Features
Gene ID: ENSGALG00000016050
  
Biological name :TTC3
  
Synonyms : tetratricopeptide repeat domain 3 / TTC3
  
Possible biological names infered from orthology : P53804
  
Species: Gallus gallus
  
Chr. number: 1
Strand: 1
Band:
Gene start: 107001974
Gene end: 107060482
  
Corresponding Affymetrix probe sets: GgaAffx.10236.1.S1_at (Chicken Array)   GgaAffx.10236.1.S1_s_at (Chicken Array)   GgaAffx.10236.2.S1_at (Chicken Array)   GgaAffx.10236.3.S1_at (Chicken Array)   GgaAffx.10236.3.S1_s_at (Chicken Array)   GgaAffx.10236.4.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000025812
NCBI entrez gene - 418518     See in Manteia.
RefSeq - XM_015301416
RefSeq - XM_015301422
RefSeq - XM_015301429
RefSeq - XM_015301434
RefSeq - XM_015301440
RefSeq - XM_416727
RefSeq - XM_015301408
swissprot - F1P0T0
Ensembl - ENSGALG00000016050
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 si:ch211-139a5.1ENSDARG00000092018Danio rerio
 TTC3ENSG00000182670Homo sapiens
 Ttc3ENSMUSG00000040785Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RNF214 / ring finger protein 214 / Q8BFU3* / Q8ND24*ENSGALG000000369934


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR013026  Tetratricopeptide repeat-containing domain
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR019734  Tetratricopeptide repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0070936 protein K48-linked ubiquitination IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005829 cytosol IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr