ENSGALG00000016387


Gallus gallus

Features
Gene ID: ENSGALG00000016387
  
Biological name :TRAPPC12
  
Synonyms : trafficking protein particle complex 12 / TRAPPC12
  
Possible biological names infered from orthology : Q8K2L8 / Q8WVT3
  
Species: Gallus gallus
  
Chr. number: 3
Strand: 1
Band:
Gene start: 94019770
Gene end: 94067081
  
Corresponding Affymetrix probe sets: Gga.11178.1.S1_s_at (Chicken Array)   GgaAffx.10494.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000057772
Ensembl peptide - ENSGALP00000026384
NCBI entrez gene - 421917     See in Manteia.
RefSeq - XM_419934
RefSeq - XM_004940513
swissprot - F1NN25
swissprot - A0A1D5PXS5
Ensembl - ENSGALG00000016387
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trappc12ENSDARG00000060101Danio rerio
 Q8WVT3ENSG00000171853Homo sapiens
 Q8K2L8ENSMUSG00000020628Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR013026  Tetratricopeptide repeat-containing domain
 IPR019734  Tetratricopeptide repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0006888 ER to Golgi vesicle-mediated transport IEA
 biological_processGO:0007030 Golgi organization IEA
 biological_processGO:0051259 protein complex oligomerization IEA
 biological_processGO:0051310 metaphase plate congression IEA
 biological_processGO:0090234 regulation of kinetochore assembly IEA
 biological_processGO:1905342 positive regulation of protein localization to kinetochore IEA
 cellular_componentGO:0000776 kinetochore IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005793 endoplasmic reticulum-Golgi intermediate compartment IEA
 cellular_componentGO:0030008 TRAPP complex IEA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IEA
 molecular_functionGO:0004175 endopeptidase activity IBA


Pathways (from Reactome)
Pathway description
RAB GEFs exchange GTP for GDP on RABs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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