ENSGALG00000017105


Gallus gallus

Features
Gene ID: ENSGALG00000017105
  
Biological name :RNF6
  
Synonyms : ring finger protein 6 / RNF6
  
Possible biological names infered from orthology : E3 ubiquitin-protein ligase RNF6 / Q9DBU5 / Q9Y252
  
Species: Gallus gallus
  
Chr. number: 1
Strand: 1
Band:
Gene start: 176714969
Gene end: 176724733
  
Corresponding Affymetrix probe sets: GgaAffx.10958.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000044285
Ensembl peptide - ENSGALP00000058673
Ensembl peptide - ENSGALP00000044645
Ensembl peptide - ENSGALP00000027579
NCBI entrez gene - 418935     See in Manteia.
RefSeq - XM_015279041
RefSeq - XM_004938789
RefSeq - XM_015279005
RefSeq - XM_015279010
RefSeq - XM_004938784
RefSeq - XM_004938786
RefSeq - XM_004938787
RefSeq - XM_004938788
swissprot - E1C2S8
swissprot - A0A1L1RIV3
swissprot - A0A1D5NWA7
Ensembl - ENSGALG00000017105
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rnf6ENSDARG00000077955Danio rerio
 RNF6ENSG00000127870Homo sapiens
 Rnf6ENSMUSG00000029634Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RLIM / E3 ubiquitin-protein ligase RLIM / Q9NVW2* / Q9WTV7* / ring finger protein, LIM domain interacting* / Mus musculus ring finger protein, LIM domain interacting (Rlim), transcript var...ENSGALG0000000775040
RNF44 / ring finger protein 44 / Q3UHJ8* / Q7L0R7*ENSGALG0000002644312
RNF38 / ring finger protein 38 / Q8BI21* / Q9H0F5* / Mus musculus ring finger protein 38 (Rnf38), transcript variant 3, mRNA.*ENSGALG0000001531111


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0030517 negative regulation of axon extension IEA
 biological_processGO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IBA
 biological_processGO:0044314 protein K27-linked ubiquitination IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0060765 regulation of androgen receptor signaling pathway IBA
 biological_processGO:0070936 protein K48-linked ubiquitination IEA
 biological_processGO:0085020 protein K6-linked ubiquitination IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0016605 PML body IEA
 cellular_componentGO:0030424 axon IEA
 cellular_componentGO:0031965 nuclear membrane IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0050681 androgen receptor binding IEA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IBA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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