ENSMUSG00000029634


Mus musculus

Features
Gene ID: ENSMUSG00000029634
  
Biological name :Rnf6
  
Synonyms : E3 ubiquitin-protein ligase RNF6 / Q9DBU5 / Rnf6
  
Possible biological names infered from orthology : Q9Y252 / ring finger protein 6
  
Species: Mus musculus
  
Chr. number: 5
Strand: -1
Band: G3
Gene start: 146209192
Gene end: 146221555
  
Corresponding Affymetrix probe sets: 10535725 (MoGene1.0st)   1427898_at (Mouse Genome 430 2.0 Array)   1427899_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000125611
Ensembl peptide - ENSMUSP00000123926
Ensembl peptide - ENSMUSP00000124293
Ensembl peptide - ENSMUSP00000067559
Ensembl peptide - ENSMUSP00000128774
Ensembl peptide - ENSMUSP00000123708
Ensembl peptide - ENSMUSP00000123730
NCBI entrez gene - 74132     See in Manteia.
MGI - MGI:1921382
RefSeq - NM_028774
RefSeq - NM_001256085
RefSeq - NM_001256086
RefSeq - NM_001256087
RefSeq Peptide - NP_001243014
RefSeq Peptide - NP_083050
RefSeq Peptide - NP_001243016
RefSeq Peptide - NP_001243015
swissprot - Q9DBU5
swissprot - E0CYS7
swissprot - E0CYZ9
swissprot - E0CZ82
swissprot - F6VG71
Ensembl - ENSMUSG00000029634
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rnf6ENSDARG00000077955Danio rerio
 RNF6ENSGALG00000017105Gallus gallus
 RNF6ENSG00000127870Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Rlim / Q9WTV7 / Mus musculus ring finger protein, LIM domain interacting (Rlim), transcript variant 2, mRNA. / Q9NVW2* / ring finger protein, LIM domain interacting*ENSMUSG0000005653739
Rnf38 / Q8BI21 / Mus musculus ring finger protein 38 (Rnf38), transcript variant 3, mRNA. / Q9H0F5* / ring finger protein 38*ENSMUSG0000003569613
Rnf44 / Q3UHJ8 / RING finger protein 44 / Q7L0R7*ENSMUSG0000003492812


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated ISO
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IDA
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0030517 negative regulation of axon extension IMP
 biological_processGO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IBA
 biological_processGO:0044314 protein K27-linked ubiquitination ISS
 biological_processGO:0045893 positive regulation of transcription, DNA-templated ISO
 biological_processGO:0060765 regulation of androgen receptor signaling pathway IBA
 biological_processGO:0070936 protein K48-linked ubiquitination IMP
 biological_processGO:0085020 protein K6-linked ubiquitination ISO
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0016605 PML body IEA
 cellular_componentGO:0030424 axon IDA
 cellular_componentGO:0031965 nuclear membrane ISO
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle ISO
 molecular_functionGO:0003677 DNA binding IDA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity ISO
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0050681 androgen receptor binding ISS
 molecular_functionGO:0061630 ubiquitin protein ligase activity IDA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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