ENSMUSG00000035696


Mus musculus

Features
Gene ID: ENSMUSG00000035696
  
Biological name :Rnf38
  
Synonyms : Mus musculus ring finger protein 38 (Rnf38), transcript variant 3, mRNA. / Q8BI21 / Rnf38
  
Possible biological names infered from orthology : Q9H0F5 / ring finger protein 38
  
Species: Mus musculus
  
Chr. number: 4
Strand: -1
Band: B1
Gene start: 44126210
Gene end: 44233789
  
Corresponding Affymetrix probe sets: 10512655 (MoGene1.0st)   1428101_at (Mouse Genome 430 2.0 Array)   1431993_a_at (Mouse Genome 430 2.0 Array)   1442259_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000116642
Ensembl peptide - ENSMUSP00000103467
Ensembl peptide - ENSMUSP00000119889
Ensembl peptide - ENSMUSP00000122342
Ensembl peptide - ENSMUSP00000121329
Ensembl peptide - ENSMUSP00000038477
Ensembl peptide - ENSMUSP00000095702
Ensembl peptide - ENSMUSP00000099998
NCBI entrez gene - 73469     See in Manteia.
MGI - MGI:1920719
RefSeq - XM_011250120
RefSeq - XM_006538303
RefSeq - XM_006538304
RefSeq - XM_006538305
RefSeq - XM_006538306
RefSeq - XM_011250115
RefSeq - XM_011250116
RefSeq - XM_011250117
RefSeq - XM_011250118
RefSeq - XM_011250119
RefSeq - NM_001038993
RefSeq - NM_001355181
RefSeq - NM_175201
RefSeq - XM_006538298
RefSeq - XM_006538299
RefSeq - XM_006538300
RefSeq - XM_006538301
RefSeq - XM_006538302
RefSeq Peptide - NP_001034082
RefSeq Peptide - NP_001342110
RefSeq Peptide - NP_780410
swissprot - Q3UH35
swissprot - E9Q959
swissprot - B1AWE7
swissprot - Q8BI21
swissprot - B1AWE9
swissprot - B1AWE8
Ensembl - ENSMUSG00000035696
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rnf38ENSDARG00000062055Danio rerio
 RNF38ENSGALG00000015311Gallus gallus
 RNF38ENSG00000137075Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Rnf44 / Q3UHJ8 / RING finger protein 44 / Q7L0R7*ENSMUSG0000003492856
Rlim / Q9WTV7 / Mus musculus ring finger protein, LIM domain interacting (Rlim), transcript variant 2, mRNA. / Q9NVW2* / ring finger protein, LIM domain interacting*ENSMUSG0000005653719
Rnf6 / Q9DBU5 / E3 ubiquitin-protein ligase RNF6 / Q9Y252* / ring finger protein 6*ENSMUSG0000002963419


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008584 male gonad development IEA
 biological_processGO:0016567 protein ubiquitination ISO
 biological_processGO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IBA
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0036126 sperm flagellum IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0010097 abnormal retinal blood vessel morphology "any structural anomaly of the blood vessels supplying the retina" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Rnf10tm1b(KOMP)Wtsi/Rnf10tm1b(KOMP)Wtsi
Genetic Background: C57BL/6N-Rnf10tm1b(KOMP)Wtsi/Ucd

 MP:0010123 increased bone mineral content "elevation in the amount (usually in grams/cm) of bone mineral divided by a bone-scanned area" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Rnf10tm1b(KOMP)Wtsi/Rnf10tm1b(KOMP)Wtsi
Genetic Background: C57BL/6N-Rnf10tm1b(KOMP)Wtsi/Ucd

 MP:0011110 partial preweaning lethality "the appearance of lower than Mendelian ratios of organisms of a given genotype due to death of some, but not all of the organisms between fertilization and weaning age (Mus: approximately 3-4 weeks of age)" [MGI:csmith]
Show

Allelic Composition: Rnf10tm1b(KOMP)Wtsi/Rnf10tm1b(KOMP)Wtsi
Genetic Background: C57BL/6N-Rnf10tm1b(KOMP)Wtsi/Ucd

 MP:0011967 increased or absent threshold for auditory brainstem response "increase in the value at which one or more sound frequencies or broadband clicks first elicits a recordable response generated by electrical activity of neurons in the ascending auditory system, or complete lack of a recordable response at any frequency or broadband click" [MGI:csmith]
Show

Allelic Composition: Rnf10tm1b(KOMP)Wtsi/Rnf10tm1b(KOMP)Wtsi
Genetic Background: C57BL/6N-Rnf10tm1b(KOMP)Wtsi/Ucd

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr