ENSDARG00000062055


Danio rerio

Features
Gene ID: ENSDARG00000062055
  
Biological name :rnf38
  
Synonyms : ring finger protein 38 / rnf38
  
Possible biological names infered from orthology : Mus musculus ring finger protein 38 (Rnf38), transcript variant 3, mRNA. / Q8BI21 / Q9H0F5
  
Species: Danio rerio
  
Chr. number: 1
Strand: 1
Band:
Gene start: 18863060
Gene end: 18933671
  
Corresponding Affymetrix probe sets: Dr.23514.1.A1_at (Zebrafish Array)   Dr.4052.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000113766
Ensembl peptide - ENSDARP00000146851
Ensembl peptide - ENSDARP00000151548
NCBI entrez gene - 566820     See in Manteia.
swissprot - E7FDX7
ZFIN ID - ZDB-GENE-030131-8693
Ensembl - ENSDARG00000062055
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RNF38ENSGALG00000015311Gallus gallus
 RNF38ENSG00000137075Homo sapiens
 Rnf38ENSMUSG00000035696Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rnf44 / Q08CG8 / ring finger protein 44 / Q7L0R7*ENSDARG0000006858240
si:ch211-59o9.10ENSDARG0000008996715
rlim / ring finger protein, LIM domain interacting / Q9NVW2* / Q9WTV7* / Mus musculus ring finger protein, LIM domain interacting (Rlim), transcript variant 2, mRNA.*ENSDARG0000007930613
rnf6 / ring finger protein (C3H2C3 type) 6 / Q9Y252* / Q9DBU5* / ring finger protein 6* / E3 ubiquitin-protein ligase RNF6 *ENSDARG0000007795512


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IBA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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