ENSGALG00000024082


Gallus gallus

Features
Gene ID: ENSGALG00000024082
  
Biological name :SMCR8
  
Synonyms : SMCR8 / Smith-Magenis syndrome chromosome region, candidate 8
  
Possible biological names infered from orthology : Guanine nucleotide exchange protein SMCR8 / Q3UMB5 / Q8TEV9
  
Species: Gallus gallus
  
Chr. number: 14
Strand: 1
Band:
Gene start: 5122026
Gene end: 5127232
  
Corresponding Affymetrix probe sets: Gga.2362.1.S1_s_at (Chicken Array)   GgaAffx.26386.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000039859
NCBI entrez gene - 416519     See in Manteia.
RefSeq - XM_004945206
swissprot - E1C6H9
Ensembl - ENSGALG00000024082
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 E7FA21ENSDARG00000052818Danio rerio
 smcr8bENSDARG00000015803Danio rerio
 SMCR8ENSG00000176994Homo sapiens
 Smcr8ENSMUSG00000049323Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
No match


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006469 negative regulation of protein kinase activity IEA
 biological_processGO:0010506 regulation of autophagy IEA
 biological_processGO:0010629 negative regulation of gene expression IEA
 biological_processGO:0016242 negative regulation of macroautophagy IEA
 biological_processGO:0032008 positive regulation of TOR signaling IEA
 biological_processGO:1901098 positive regulation of autophagosome maturation IEA
 biological_processGO:1902902 negative regulation of autophagosome assembly IEA
 biological_processGO:1903432 regulation of TORC1 signaling IEA
 cellular_componentGO:0000785 chromatin IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0032045 guanyl-nucleotide exchange factor complex IEA
 cellular_componentGO:1990316 Atg1/ULK1 kinase complex IEA
 molecular_functionGO:0004860 protein kinase inhibitor activity IEA
 molecular_functionGO:0017112 Rab guanyl-nucleotide exchange factor activity IEA
 molecular_functionGO:0019901 protein kinase binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr