ENSGALG00000026517


Gallus gallus

Features
Gene ID: ENSGALG00000026517
  
Biological name :RFC5
  
Synonyms : replication factor C subunit 5 / RFC5
  
Possible biological names infered from orthology : P40937 / Q9D0F6 / replication factor C (activator 1) 5
  
Species: Gallus gallus
  
Chr. number: 15
Strand: -1
Band:
Gene start: 11273928
Gene end: 11335110
  
Corresponding Affymetrix probe sets: Gga.6221.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000043688
Ensembl peptide - ENSGALP00000060503
Ensembl peptide - ENSGALP00000059782
Ensembl peptide - ENSGALP00000040730
NCBI entrez gene - 100859719     See in Manteia.
RefSeq - XM_015294887
RefSeq - XM_015294888
RefSeq - XM_015294890
swissprot - A0A1L1RNZ5
swissprot - A0A1D5NTN1
swissprot - R4GFE1
Ensembl - ENSGALG00000026517
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rfc5ENSDARG00000035634Danio rerio
 RFC5ENSG00000111445Homo sapiens
 Rfc5ENSMUSG00000029363Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR008921  DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal
 IPR013748  Replication factor C, C-terminal
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006260 DNA replication IEA
 biological_processGO:0006261 DNA-dependent DNA replication IBA
 biological_processGO:0006281 DNA repair IBA
 biological_processGO:1900264 positive regulation of DNA-directed DNA polymerase activity IEA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005663 DNA replication factor C complex IEA
 cellular_componentGO:0031390 Ctf18 RFC-like complex IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003689 DNA clamp loader activity IEA
 molecular_functionGO:0019899 enzyme binding IEA
 molecular_functionGO:0043142 single-stranded DNA-dependent ATPase activity IEA


Pathways (from Reactome)
Pathway description
Translesion synthesis by REV1
Recognition of DNA damage by PCNA-containing replication complex
Translesion Synthesis by POLH
Polymerase switching on the C-strand of the telomere
Activation of ATR in response to replication stress
PCNA-Dependent Long Patch Base Excision Repair
Translesion synthesis by POLK
Translesion synthesis by POLI
Termination of translesion DNA synthesis
HDR through Single Strand Annealing (SSA)
HDR through Homologous Recombination (HRR)
Processing of DNA double-strand break ends
Presynaptic phase of homologous DNA pairing and strand exchange
Gap-filling DNA repair synthesis and ligation in GG-NER
Dual Incision in GG-NER
Dual incision in TC-NER
Gap-filling DNA repair synthesis and ligation in TC-NER
Polymerase switching


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr