ENSGALG00000028205


Gallus gallus

Features
Gene ID: ENSGALG00000028205
  
Biological name :PRPF3
  
Synonyms : PRPF3 / U4/U6 small nuclear ribonucleoprotein Prp3
  
Possible biological names infered from orthology : O43395 / pre-mRNA processing factor 3 / Q922U1
  
Species: Gallus gallus
  
Chr. number: 25
Strand: -1
Band:
Gene start: 2368227
Gene end: 2727299
  
Corresponding Affymetrix probe sets: GgaAffx.12652.1.S1_s_at (Chicken Array)   GgaAffx.25285.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000047762
Ensembl peptide - ENSGALP00000039818
NCBI entrez gene - 426667     See in Manteia.
RefSeq - XM_015298639
RefSeq - NM_001031390
RefSeq Peptide - NP_001026561
swissprot - A0A1D5P4Z8
swissprot - H9L3J2
Ensembl - ENSGALG00000028205
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 prpf3ENSDARG00000086425Danio rerio
 PRPF3ENSG00000117360Homo sapiens
 Prpf3ENSMUSG00000015748Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002483  PWI domain
 IPR010541  Domain of unknown function DUF1115
 IPR013881  Pre-mRNA-splicing factor 3
 IPR027104  U4/U6 small nuclear ribonucleoprotein Prp3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000244 spliceosomal tri-snRNP complex assembly IEA
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 biological_processGO:0006397 mRNA processing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0015030 Cajal body IEA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0046540 U4/U6 x U5 tri-snRNP complex IEA
 molecular_functionGO:0042802 identical protein binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr