ENSGALG00000030940


Gallus gallus

Features
Gene ID: ENSGALG00000030940
  
Biological name :BLB2
  
Synonyms : BLB2 / Gallus gallus Major histocompatibility complex class II beta chain BLB2, (similar to HLA class II, D beta chain) (BLB2), mRNA.
  
Possible biological names infered from orthology : AL645941.2 / H2-DMb1 / H2-DMb2 / histocompatibility 2, class II, locus Mb1 / histocompatibility 2, class II, locus Mb2 / HLA-DMB / major histocompatibility complex, class II, DM beta / P28068
  
Species: Gallus gallus
  
Chr. number: 16
Strand: -1
Band:
Gene start: 109677
Gene end: 111212
  
Corresponding Affymetrix probe sets: Gga.13336.3.S1_a_at (Chicken Array)   Gga.13336.3.S1_x_at (Chicken Array)   Gga.13336.5.S1_x_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000045568
Ensembl peptide - ENSGALP00000053880
Ensembl peptide - ENSGALP00000052055
NCBI entrez gene - 101747454     See in Manteia.
RefSeq - NM_001318995
RefSeq - XM_015295014
RefSeq Peptide - NP_001305924
swissprot - A5HUL4
swissprot - A0A1D5PM07
swissprot - A0A1D5NYV7
Ensembl - ENSGALG00000030940
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CU929676.1ENSDARG00000104635Danio rerio
 FO744840.1ENSDARG00000110501Danio rerio
 mhc2bENSDARG00000104730Danio rerio
 mhc2dabENSDARG00000079105Danio rerio
 mhc2dbbENSDARG00000056330Danio rerio
 si:busm1-104n07.3ENSDARG00000074510Danio rerio
 si:busm1-228j01.4ENSDARG00000088872Danio rerio
 si:busm1-228j01.6ENSDARG00000041705Danio rerio
 si:ch73-158p21.3ENSDARG00000101030Danio rerio
 si:zfos-2070c2.3ENSDARG00000076307Danio rerio
 zgc:103700ENSDARG00000116524Danio rerio
 AL645941.2ENSG00000248993Homo sapiens
 P28068ENSG00000242574Homo sapiens
 H2-DMb1ENSMUSG00000079547Mus musculus
 H2-DMb2ENSMUSG00000037548Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
BLB1 / P28068* / HLA-DMB* / H2-DMb1* / H2-DMb2* / AL645941.2* / histocompatibility 2, class II, locus Mb2* / histocompatibility 2, class II, locus Mb1* / major histocompatibility complex, c...ENSGALG0000000014166
P28068* / HLA-DMB* / H2-DMb1* / H2-DMb2* / AL645941.2* / histocompatibility 2, class II, locus Mb2* / histocompatibility 2, class II, locus Mb1* / major histocompatibility complex, class II, DM beta*ENSGALG0000004450239
P28068* / HLA-DMB* / H2-DMb1* / H2-DMb2* / AL645941.2* / histocompatibility 2, class II, locus Mb2* / histocompatibility 2, class II, locus Mb1* / major histocompatibility complex, class II, DM beta*ENSGALG0000003431937
DMB1ENSGALG0000000016221
DMB2ENSGALG0000003839319


Protein motifs (from Interpro)
Interpro ID Name
 IPR000353  MHC class II, beta chain, N-terminal
 IPR003006  Immunoglobulin/major histocompatibility complex, conserved site
 IPR003597  Immunoglobulin C1-set
 IPR007110  Immunoglobulin-like domain
 IPR011162  MHC classes I/II-like antigen recognition protein
 IPR013783  Immunoglobulin-like fold
 IPR014745  MHC class II, alpha/beta chain, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006955 immune response IEA
 biological_processGO:0019882 antigen processing and presentation IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0042613 MHC class II protein complex IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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