ENSDARG00000104730


Danio rerio

Features
Gene ID: ENSDARG00000104730
  
Biological name :mhc2b
  
Synonyms : major histocompatibility complex class II integral membrane beta chain gene / mhc2b / si:dkey-33b17.3
  
Possible biological names infered from orthology : AL645941.2 / H2-Ab1 / H2-DMb1 / H2-DMb2 / H2-Eb1 / H2-Eb2 / H2-Ob / histocompatibility 2, class II antigen A, beta 1 / histocompatibility 2, class II, locus Mb1 / histocompatibility 2, class II, locus Mb2 / histocompatibility 2, O region beta locus / HLA-DMB / HLA-DOB / HLA-DPB1 / HLA-DQB1 / HLA-DQB2 / HLA-DRB1 / HLA-DRB5 / major histocompatibility complex, class II, DM beta / major histocompatibility complex, class II, DO beta / major histocompatibility complex, class II, DP beta 1 / major histocompatibility complex, class II, DQ beta 1 / major histocompatibility complex, class II, DQ beta 2 / major histocompatibility complex, class II, DR beta 1 / major histocompatibility complex, class II, DR beta 5 / P01911 / P04229 / P04440 / P05538 / P13765 / P14483 / P28068 / Q29974 / Q30154 / Q9GIY3
  
Species: Danio rerio
  
Chr. number: 8
Strand: 1
Band:
Gene start: 36142734
Gene end: 36146191
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000137499
Ensembl peptide - ENSDARP00000139928
NCBI entrez gene - 563286     See in Manteia.
RefSeq - NM_001080633
RefSeq Peptide - NP_001074102
swissprot - F1QNN2
swissprot - A0A0R4IRA8
ZFIN ID - ZDB-GENE-030616-171
ZFIN ID - ZDB-GENE-030616-319
Ensembl - ENSDARG00000104730
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000044502Gallus gallus
 ENSGALG00000034319Gallus gallus
 BLB1ENSGALG00000000141Gallus gallus
 BLB2ENSGALG00000030940Gallus gallus
 DMB1ENSGALG00000000162Gallus gallus
 DMB2ENSGALG00000038393Gallus gallus
 AL645941.2ENSG00000248993Homo sapiens
 HLA-DQB1ENSG00000179344Homo sapiens
 P01911ENSG00000196126Homo sapiens
 P04440ENSG00000223865Homo sapiens
 P05538ENSG00000232629Homo sapiens
 P13765ENSG00000241106Homo sapiens
 P28068ENSG00000242574Homo sapiens
 Q30154ENSG00000198502Homo sapiens
 H2-Ab1ENSMUSG00000073421Mus musculus
 H2-DMb1ENSMUSG00000079547Mus musculus
 H2-DMb2ENSMUSG00000037548Mus musculus
 H2-Eb1ENSMUSG00000060586Mus musculus
 H2-Eb2ENSMUSG00000067341Mus musculus
 H2-ObENSMUSG00000041538Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CU929676.1 / P04229* / Q30154* / Q29974* / P28068* / P13765* / P05538* / P04440* / P01911* / Q9GIY3* / HLA-DMB* / HLA-DOB* / HLA-DPB1* / HLA-DQB1* / HLA-DQB2* / HLA-DRB1* / HLA-DRB5* / AL64...ENSDARG0000010463561
si:busm1-104n07.3 / H2-Ob* / P04229* / P01911* / H2-Eb1* / H2-Eb2* / Q9GIY3* / Q30154* / Q29974* / P14483* / P05538* / P04440* / H2-Ab1* / P28068* / P13765* / H2-DMb1* / HLA-DOB* / HLA-DMB*...ENSDARG0000007451055
si:zfos-2070c2.3 / H2-Ob* / P04229* / P01911* / H2-Eb1* / H2-Eb2* / Q9GIY3* / Q30154* / Q29974* / P14483* / P05538* / P04440* / H2-Ab1* / P28068* / P13765* / H2-DMb1* / HLA-DOB* / HLA-DMB* ...ENSDARG0000007630753
mhc2dab / major histocompatibility complex class II DAB gene / H2-Ob* / Q9GIY3* / H2-Ab1* / H2-Eb1* / H2-Eb2* / P01911* / P04229* / P04440* / P05538* / P13765* / P14483* / P28068* / Q29974*...ENSDARG0000007910547
zgc:103700 / P04229* / Q30154* / Q29974* / P28068* / P13765* / P05538* / P01911* / P04440* / Q9GIY3* / HLA-DOB* / HLA-DMB* / HLA-DQB1* / HLA-DRB1* / HLA-DRB5* / HLA-DQB2* / HLA-DPB1* / AL64...ENSDARG0000011652446
si:busm1-228j01.4 / P04229* / Q30154* / Q29974* / P28068* / P13765* / P05538* / P01911* / P04440* / Q9GIY3* / HLA-DOB* / HLA-DMB* / HLA-DQB1* / HLA-DRB1* / HLA-DRB5* / HLA-DQB2* / HLA-DPB1*...ENSDARG0000008887240
si:ch73-158p21.3 / H2-Ob* / P04229* / P01911* / H2-Eb1* / H2-Eb2* / Q9GIY3* / Q30154* / Q29974* / P14483* / P05538* / P04440* / H2-Ab1* / P28068* / P13765* / H2-DMb1* / HLA-DOB* / HLA-DMB* ...ENSDARG0000010103040
si:busm1-228j01.6 / H2-Ob* / P04229* / P01911* / H2-Eb1* / H2-Eb2* / Q9GIY3* / Q30154* / Q29974* / P14483* / P05538* / P04440* / H2-Ab1* / P28068* / P13765* / H2-DMb1* / HLA-DOB* / HLA-DMB*...ENSDARG0000004170539
mhc2dbb / major histocompatibility complex class II DBB gene / H2-Ob* / Q9GIY3* / H2-Ab1* / H2-Eb1* / H2-Eb2* / P01911* / P04229* / P04440* / P05538* / P13765* / P14483* / P28068* / Q29974*...ENSDARG0000005633035
FO744840.1 / P04229* / Q30154* / Q29974* / P28068* / P13765* / P05538* / P04440* / P01911* / Q9GIY3* / HLA-DMB* / HLA-DOB* / HLA-DPB1* / HLA-DQB1* / HLA-DQB2* / HLA-DRB1* / HLA-DRB5* / AL64...ENSDARG0000011050134


Protein motifs (from Interpro)
Interpro ID Name
 IPR000353  MHC class II, beta chain, N-terminal
 IPR003597  Immunoglobulin C1-set
 IPR007110  Immunoglobulin-like domain
 IPR011162  MHC classes I/II-like antigen recognition protein
 IPR013783  Immunoglobulin-like fold
 IPR014745  MHC class II, alpha/beta chain, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006955 immune response IEA
 biological_processGO:0019882 antigen processing and presentation IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0042613 MHC class II protein complex IEA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
MHC class II antigen presentation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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