ENSG00000196126


Homo sapiens

Features
Gene ID: ENSG00000196126
  
Biological name :HLA-DRB1
  
Synonyms : HLA-DRB1 / major histocompatibility complex, class II, DR beta 1 / P01911 / P04229 / Q29974 / Q9GIY3
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 6
Strand: -1
Band: p21.32
Gene start: 32578769
Gene end: 32589848
  
Corresponding Affymetrix probe sets: 204670_x_at (Human Genome U133 Plus 2.0 Array)   208306_x_at (Human Genome U133 Plus 2.0 Array)   209312_x_at (Human Genome U133 Plus 2.0 Array)   215193_x_at (Human Genome U133 Plus 2.0 Array)   221491_x_at (Human Genome U133 Plus 2.0 Array)   238900_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000353099
NCBI entrez gene - 3123     See in Manteia.
OMIM - 142857
RefSeq - NM_002124
RefSeq Peptide - NP_002115
swissprot - D7RIH8
swissprot - P01911
swissprot - P04229
swissprot - Q29974
swissprot - Q9GIY3
swissprot - X5DNQ0
Ensembl - ENSG00000196126
  
Related genetic diseases (OMIM): 126200 - {Multiple sclerosis, susceptibility to, 1}, 126200
  181000 - {Sarcoidosis, susceptibility to, 1}, 181000
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CU929676.1ENSDARG00000104635Danio rerio
 FO744840.1ENSDARG00000110501Danio rerio
 mhc2bENSDARG00000104730Danio rerio
 mhc2dabENSDARG00000079105Danio rerio
 mhc2dbbENSDARG00000056330Danio rerio
 si:busm1-104n07.3ENSDARG00000074510Danio rerio
 si:busm1-228j01.4ENSDARG00000088872Danio rerio
 si:busm1-228j01.6ENSDARG00000041705Danio rerio
 si:ch73-158p21.3ENSDARG00000101030Danio rerio
 si:zfos-2070c2.3ENSDARG00000076307Danio rerio
 zgc:103700ENSDARG00000116524Danio rerio
 H2-Eb1ENSMUSG00000060586Mus musculus
 H2-Eb2ENSMUSG00000067341Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q30154 / HLA-DRB5 / major histocompatibility complex, class II, DR beta 5ENSG0000019850289
HLA-DQB1 / major histocompatibility complex, class II, DQ beta 1ENSG0000017934464
P05538 / HLA-DQB2 / major histocompatibility complex, class II, DQ beta 2ENSG0000023262964
P04440 / HLA-DPB1 / major histocompatibility complex, class II, DP beta 1ENSG0000022386561
P13765 / HLA-DOB / major histocompatibility complex, class II, DO betaENSG0000024110655
P28068 / HLA-DMB / major histocompatibility complex, class II, DM betaENSG0000024257423
AL645941.2ENSG000002489939


Protein motifs (from Interpro)
Interpro ID Name
 IPR000353  MHC class II, beta chain, N-terminal
 IPR003006  Immunoglobulin/major histocompatibility complex, conserved site
 IPR003597  Immunoglobulin C1-set
 IPR007110  Immunoglobulin-like domain
 IPR011162  MHC classes I/II-like antigen recognition protein
 IPR013783  Immunoglobulin-like fold
 IPR014745  MHC class II, alpha/beta chain, N-terminal
 IPR036179  Immunoglobulin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002376 immune system process IEA
 biological_processGO:0002381 immunoglobulin production involved in immunoglobulin mediated immune response ISS
 biological_processGO:0002437 inflammatory response to antigenic stimulus ISS
 biological_processGO:0002455 humoral immune response mediated by circulating immunoglobulin ISS
 biological_processGO:0002504 antigen processing and presentation of peptide or polysaccharide antigen via MHC class II IEA
 biological_processGO:0002506 polysaccharide assembly with MHC class II protein complex IDA
 biological_processGO:0006955 immune response NAS
 biological_processGO:0016032 viral process IEA
 biological_processGO:0016045 detection of bacterium ISS
 biological_processGO:0019882 antigen processing and presentation IEA
 biological_processGO:0019886 antigen processing and presentation of exogenous peptide antigen via MHC class II TAS
 biological_processGO:0031295 T cell costimulation TAS
 biological_processGO:0032673 regulation of interleukin-4 production ISS
 biological_processGO:0032689 negative regulation of interferon-gamma production ISS
 biological_processGO:0035774 positive regulation of insulin secretion involved in cellular response to glucose stimulus ISS
 biological_processGO:0042088 T-helper 1 type immune response ISS
 biological_processGO:0042130 negative regulation of T cell proliferation ISS
 biological_processGO:0046718 viral entry into host cell IEA
 biological_processGO:0050852 T cell receptor signaling pathway TAS
 biological_processGO:0051262 protein tetramerization ISS
 biological_processGO:0060333 interferon-gamma-mediated signaling pathway TAS
 biological_processGO:2001179 regulation of interleukin-10 secretion ISS
 cellular_componentGO:0000139 Golgi membrane TAS
 cellular_componentGO:0005764 lysosome IEA
 cellular_componentGO:0005765 lysosomal membrane TAS
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0009897 external side of plasma membrane ISS
 cellular_componentGO:0009986 cell surface IDA
 cellular_componentGO:0010008 endosome membrane IEA
 cellular_componentGO:0012507 ER to Golgi transport vesicle membrane TAS
 cellular_componentGO:0016020 membrane NAS
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030658 transport vesicle membrane TAS
 cellular_componentGO:0030666 endocytic vesicle membrane TAS
 cellular_componentGO:0030669 clathrin-coated endocytic vesicle membrane TAS
 cellular_componentGO:0031902 late endosome membrane IEA
 cellular_componentGO:0032588 trans-Golgi network membrane TAS
 cellular_componentGO:0042613 MHC class II protein complex IDA
 cellular_componentGO:0070062 extracellular exosome HDA
 cellular_componentGO:0071556 integral component of lumenal side of endoplasmic reticulum membrane TAS
 molecular_functionGO:0001618 virus receptor activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0023026 MHC class II protein complex binding HDA
 molecular_functionGO:0032395 MHC class II receptor activity NAS
 molecular_functionGO:0042605 peptide antigen binding IDA


Pathways (from Reactome)
Pathway description
Downstream TCR signaling
Phosphorylation of CD3 and TCR zeta chains
Translocation of ZAP-70 to Immunological synapse
Generation of second messenger molecules
MHC class II antigen presentation
PD-1 signaling
Interferon gamma signaling


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000083 Renal failure 
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 HP:0000121 Nephrocalcinosis 
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 HP:0000217 Xerostomia "Dryness of the mouth due to salivary gland dysfunction." [HPO:curators]
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 HP:0000433 Abnormality of the nasal mucosa 
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000504 Abnormality of vision "Abnormality of eyesight (visual perception)." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000554 Uveitis "Inflammation of one or all portions of the uveal tract." [HPO:curators]
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 HP:0000618 Blindness 
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 HP:0000620 Dacrocystitis 
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 HP:0000670 Carious teeth 
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 HP:0000738 Hallucinations 
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 HP:0000787 Kidney stones 
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 HP:0000819 Diabetes mellitus 
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 HP:0000821 Hypothyroidism 
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 HP:0000834 Abnormality of the adrenal glands "Abnormality of the adrenal glands, i.e., of the endocrine glands located at the top of the kindneys." [HPO:curators]
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 HP:0000836 Hyperthyroidism "Hyperthyroidism refers to excessive secretion of thyroid hormone." [HPO:curators]
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 HP:0000873 Diabetes insipidus "A state of excessive water intake and hypotonic (dilute) polyuria. Diabetes insipidus may be due to failure of vasopressin (AVP) release (central or neurogenic diabetes insipidus) or to a failure of the kidney to respond to AVP (nephrogenic diabetes insipidus)." [HPO:curators]
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 HP:0000953 Hyperpigmentation 
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 HP:0000964 Eczema "Eczema is a form of dermatitis. The term eczema is broadly applied to a range of persistent skin conditions and can be related to a number of underlying conditions. Manifestations of eczema can include dryness and recurring skin rashes with redness, skin edema, itching and dryness, crusting, flaking, blistering, cracking, oozing, or bleeding." [HPO:curators]
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 HP:0000988 Skin rash 
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 HP:0001004 Lymphedema 
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 HP:0001010 Hypopigmentation of the skin 
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 HP:0001025 Urticaria 
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 HP:0001053 Hypopigmented skin patches 
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 HP:0001097 Keratoconjunctivitis sicca "Dryness of the eye related to deficiency of the tear film components (aqueous, mucin, or lipid), lid surface abnormalities, or epithelial abnormalities. Keratoconjunctivitis sicca often results in a scratchy or sandy sensation (foreign body sensation) in the eyes, and may also be associated with itching, inability to produce tears, photosensitivity, redness, pain, and difficulty in moving the eyelids." [HPO:curators]
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 HP:0001262 Somnolence 
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 HP:0001279 Syncope "Syncope refers to a generalized weakness of muscles with loss of postural tone, inability to stand upright, and loss of consciousness. Once the patient is in a horizontal position, blood flow to the brain is no longer hindered by gravitation and consciousness is regained. Unconsciousness usually lasts for seconds to minutes. Headache and drowsiness (which usually follow seizures) do not follow a syncopal attack. Syncope results from a sudden impairment of brain metabolism usually due to a reduction in cerebral blood flow. This term refers to an abnormally increased disposition to syncope." [HPO:curators]
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 HP:0001287 Meningitis 
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 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
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 HP:0001350 Slurred speech 
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 HP:0001369 Arthritis 
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 HP:0001371 Contractures 
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 HP:0001386 Joint swelling 
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 HP:0001399 Hepatic failure 
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 HP:0001409 Portal hypertension 
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 HP:0001482 Subcutaneous nodules 
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0001596 Alopecia "Loss of hair from the head or body." [HPO:curators]
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 HP:0001635 Congestive heart failure "The presence of an abnormality of cardiac function that is responsible for the failure of the heart to pump blood at a rate that is commensurate with the needs of the tissues or a state in which abnormally elevated filling pressures are required for the heart to do so. Heart failure is frequently related to a defect in myocardial contraction." [HPO:curators]
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 HP:0001701 Pericarditis 
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001824 Weight loss 
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 HP:0001873 Thrombocytopenia 
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 HP:0001878 Hemolytic anemia 
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 HP:0001880 Eosinophilia "Increased count of eosinophile granulocytes in the blood." [HPO:sdoelken]
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 HP:0001882 Leukopenia 
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 HP:0001945 Fever 
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 HP:0001970 Tubulointerstitial nephritis 
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 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
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 HP:0002017 Nausea and vomiting 
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 HP:0002020 Gastroesophageal reflux 
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 HP:0002024 Malabsorption 
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 HP:0002027 Abdominal pain 
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 HP:0002045 Hypothermia 
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 HP:0002092 Pulmonary hypertension 
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 HP:0002094 Dyspnea 
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 HP:0002097 Emphysema 
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 HP:0002105 Hemoptysis "Coughing up (expectoration) of blood or blood-streaked sputum from the larynx, trachea, bronchi, or lungs." [HPO:curators]
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 HP:0002107 Pneumothorax 
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 HP:0002110 Bronchiectasis 
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 HP:0002113 Pulmonary infiltrates 
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 HP:0002150 Hypercalciuria 
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 HP:0002189 Excessive daytime sleepiness 
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 HP:0002202 Pleural effusion "The presence of an excessive amount of fluid in the pleural cavity." [HPO:curators]
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 HP:0002206 Pulmonary fibrosis 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002494 Abnormal rapid eye movement (REM) sleep "Abnormality of REM sleep. Phases of REM sleep are characterized by desynchronized EEG patterns, increases in heart rate and blood pressure, sympathetic activation, and a profound loss of muscle tonus except for the eye and middle-ear muscles. There are then phases of rapid eye movements." [HPO:curators]
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 HP:0002524 Cataplexy 
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 HP:0002585 Abnormality of the peritoneum 
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 HP:0002665 Lymphoma "A cancer originating in lymphocytes and presenting as a solid tumor of lymhpoid cells." [HPO:curators]
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 HP:0002716 Lymphadenopathy 
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 HP:0002719 Recurrent infections 
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 HP:0002781 Upper airway obstruction 
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 HP:0002797 Osteolysis 
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 HP:0002829 Arthralgia 
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 HP:0002922 Increased CSF protein 
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 HP:0002960 Autoimmune disease 
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 HP:0003072 Hypercalcemia "A level of blood calcium that is higher than normal." [HPO:curators]
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 HP:0003565 Elevated erythrocyte sedimentation rate 
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 HP:0003701 Proximal muscle weakness "A lack of strength of the proximal muscles." [HPO:curators]
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 HP:0003765 Psoriasis 
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 HP:0004756 Ventricular tachycardia 
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 HP:0005681 Rheumatoid arthritis, juvenile 
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 HP:0007734 Enlarged lacrimal glands 
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 HP:0008066 Abnormal blistering of the skin 
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 HP:0008366 Contractures involving the joints of the feet 
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 HP:0009473 Joint contractures involving the joints of the hand 
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 HP:0009830 Peripheral neuropathy "Peripheral neuropathy is a general term for any disorder of the peripheral nervous system. The main clinical features used to classify peripheral neuropathy are distribution, type (mainly demyelinating versus mainly axonal), duration, and course." [HPO:curators]
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 HP:0010310 Chylothorax "Accumulation of excessive amounts of lymphatic fluid (chyle) in the pleural cavity." [HPO:curators]
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 HP:0010534 Transient global amnesia "A paroxysmal, transient loss of memory function with preservation of immediate recall and remote memory but with a severe impairment of memory for recent events and ability to retain new information." [HPO:curators]
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 HP:0010628 Facial muscle weakness "A weakness of any or all of the muscles of the face of any etiology." [HPO:curators]
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 HP:0010783 Erythema "Redness of the skin, caused by hyperemia of the capillaries in the lower layers of the skin." [HPO:probinson]
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 HP:0011024 Abnormality of the gastrointestinal tract "An abnormality of the `gastrointestinal tract` (FMA:71132)." [HPO:probinson]
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 HP:0011227 Elevated C-reactive protein level "An abnormal elevation of the C-reactive protein level in serum." [HPO:probinson]
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 HP:0011801 Enlargement of parotid gland "Increased size of the parotid gland." [DDD:jclayton-smith]
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 HP:0011850 Parotitis "Inflammation of the parotid gland." [HPO:probinson]
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 HP:0012062 Bone cyst "A fluid filled cavity that develops with a bone." [HPO:probinson]
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 HP:0012122 Anterior uveitis "Inflammation of the uveal tract in which the primary site of inflammation is the anterior chamber." [HPO:probinson]
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 HP:0012219 Erythema nodosum "An erythematous eruption commonly associated with drug reactions or infection and characterized by inflammatory nodules that are usually tender, multiple, and bilateral." [HPO:probinson]
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 HP:0012243 Abnormal genital system morphology "A structural or developmental anomaly of any of the tissues involved in the genital system." [HPO:probinson, MP:0002160]
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 HP:0012378 Fatigue "A subjective feeling of tiredness characterized by a lack of energy and motivation." [HPO:probinson]
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 HP:0012722 Heart block "Impaired conduction of cardiac impulse occurring anywhere along the conduction pathway." [HPO:probinson]
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 HP:0012733 Macule "A flat, distinct, discolored area of skin less than 1 cm wide that does not involve any change in the thickness or texture of the skin." [HPO:probinson]
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 HP:0012735 Cough "A sudden, audible expulsion of air from the lungs through a partially closed glottis, preceded by inhalation." [HPO:probinson]
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 HP:0030016 Dyspareunia "Recurrent or persistent genital pain associated with sexual intercourse." []
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 HP:0030142 Abnormal bowel sounds "An anomaly of the amount or nature of abdominal sounds. Abdominal sounds (bowel sounds) are made by the movement of the intestines as they promote passage of abdominal contents by peristalsis." []
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 HP:0030146 Abnormal liver parenchyma morphology 
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 HP:0030166 Night sweats "Occurence of excessive sweating during sleep." [HPO:probinson, pmid:23136329]
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 HP:0030872 Abnormal cardiac ventricular function "An abnormality of the cardiac ventricular function." [NIHR:ldaugherty]
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 HP:0040186 Maculopapular exanthema 
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 HP:0100520 Oliguria "Low output of urine, clinically classified as an output below 300-500ml/day." [HPO:sdoelken]
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 HP:0100579 Mucosal telangiectasiae "`Telangiectasia` (HP:0001009) of the mucosa, the mucous membranes which are involved in absorption and secretion that line cavities that are exposed to the external environment and internal organs." [HPO:sdoelken]
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 HP:0100585 Teleangiectasia of the skin 
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 HP:0100699 Scarring 
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 HP:0100721 Mediastinal lymphadenopathy 
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 HP:0100735 Hypertensive crisis 
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 HP:0100749 Chest pain 
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 HP:0100785 Insomnia 
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 HP:0100828 Increase in T cell number 
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 HP:0100958 Narrow foramen obturatorium 
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 HP:0200035 skin plaques "A broad papule, or confluence of papules equal to or greater than 10 mm. Has also been defined as an elevated, plateau-like lesion that is greater in its diameter than in its depth." [HPO:SKOEHLER]
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 HP:0200036 skin nodules "Morphologically similar to a papule, but greater than either 10mm in both width and depth, and most frequently centered in the dermis or subcutaneous fat." [HPO:SKOEHLER]
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 HP:0200042 skin ulcer "A discontinuity of the skin exhibiting complete loss of the epidermis and often portions of the dermis and even subcutaneous fat." [HPO:SKOEHLER]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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