ENSGALG00000041334


Gallus gallus

Features
Gene ID: ENSGALG00000041334
  
Biological name :SNRPD1
  
Synonyms : small nuclear ribonucleoprotein D1 polypeptide / SNRPD1
  
Possible biological names infered from orthology : P62314 / P62315 / Small nuclear ribonucleoprotein Sm D1
  
Species: Gallus gallus
  
Chr. number: 2
Strand: -1
Band:
Gene start: 42981988
Gene end: 42986891
  
Corresponding Affymetrix probe sets: Gga.8157.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000051821
Ensembl peptide - ENSGALP00000056840
NCBI entrez gene - 776411     See in Manteia.
RefSeq - NM_001277998
RefSeq - XM_015281596
RefSeq Peptide - NP_001264927
swissprot - A0A1D5PV79
swissprot - A0A1D5PGA0
Ensembl - ENSGALG00000041334
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snrpd1ENSDARG00000011648Danio rerio
 P62314ENSG00000167088Homo sapiens
 P62315ENSMUSG00000002477Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily
 IPR027141  Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000387 spliceosomal snRNP assembly IEA
 biological_processGO:0006396 RNA processing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005685 U1 snRNP IEA
 cellular_componentGO:0005687 U4 snRNP IEA
 cellular_componentGO:0005689 U12-type spliceosomal complex IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0034709 methylosome IEA
 cellular_componentGO:0034715 pICln-Sm protein complex IEA
 cellular_componentGO:0034719 SMN-Sm protein complex IEA
 cellular_componentGO:0071007 U2-type catalytic step 2 spliceosome IEA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IEA


Pathways (from Reactome)
Pathway description
snRNP Assembly
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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