ENSMUSG00000002477


Mus musculus

Features
Gene ID: ENSMUSG00000002477
  
Biological name :Snrpd1
  
Synonyms : P62315 / Small nuclear ribonucleoprotein Sm D1 / Snrpd1
  
Possible biological names infered from orthology : P62314 / small nuclear ribonucleoprotein D1 polypeptide
  
Species: Mus musculus
  
Chr. number: 18
Strand: 1
Band: A1
Gene start: 10617796
Gene end: 10628230
  
Corresponding Affymetrix probe sets: 10453825 (MoGene1.0st)   1416336_s_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000002551
NCBI entrez gene - 20641     See in Manteia.
MGI - MGI:98344
RefSeq - NM_009226
RefSeq Peptide - NP_033252
swissprot - P62315
Ensembl - ENSMUSG00000002477
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snrpd1ENSDARG00000011648Danio rerio
 SNRPD1ENSGALG00000041334Gallus gallus
 P62314ENSG00000167088Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily
 IPR027141  Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3
 IPR034102  Small nuclear ribonucleoprotein D1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000245 spliceosomal complex assembly IBA
 biological_processGO:0000387 spliceosomal snRNP assembly ISO
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0000243 commitment complex IBA
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005682 U5 snRNP IBA
 cellular_componentGO:0005685 U1 snRNP IEA
 cellular_componentGO:0005686 U2 snRNP IBA
 cellular_componentGO:0005687 U4 snRNP IEA
 cellular_componentGO:0005689 U12-type spliceosomal complex IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol ISS
 cellular_componentGO:0034709 methylosome IEA
 cellular_componentGO:0034715 pICln-Sm protein complex IEA
 cellular_componentGO:0034719 SMN-Sm protein complex IEA
 cellular_componentGO:0071007 U2-type catalytic step 2 spliceosome IEA
 cellular_componentGO:0071010 prespliceosome IBA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IEA
 cellular_componentGO:0097526 spliceosomal tri-snRNP complex IBA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:1990446 U1 snRNP binding IEA


Pathways (from Reactome)
Pathway description
snRNP Assembly
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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