ENSGALG00000043545


Gallus gallus

Features
Gene ID: ENSGALG00000043545
  
Biological name :PNPT1
  
Synonyms : PNPT1 / polyribonucleotide nucleotidyltransferase 1
  
Possible biological names infered from orthology : Polyribonucleotide nucleotidyltransferase 1, mitochondrial / Q8K1R3 / Q8TCS8
  
Species: Gallus gallus
  
Chr. number: 3
Strand: -1
Band:
Gene start: 209588
Gene end: 225952
  
Corresponding Affymetrix probe sets: Gga.15745.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000045620
NCBI entrez gene - 421206     See in Manteia.
RefSeq - XM_419282
swissprot - A0A1D5NZ09
Ensembl - ENSGALG00000043545
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PNPT1ENSG00000138035Homo sapiens
 Pnpt1ENSMUSG00000020464Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001247  Exoribonuclease, phosphorolytic domain 1
 IPR003029  S1 domain
 IPR004088  K Homology domain, type 1
 IPR012162  Polyribonucleotide nucleotidyltransferase
 IPR012340  Nucleic acid-binding, OB-fold
 IPR015847  Exoribonuclease, phosphorolytic domain 2
 IPR015848  Polyribonucleotide nucleotidyltransferase, RNA-binding domain
 IPR020568  Ribosomal protein S5 domain 2-type fold
 IPR022967  RNA-binding domain, S1
 IPR027408  PNPase/RNase PH domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000957 mitochondrial RNA catabolic process IEA
 biological_processGO:0000958 mitochondrial mRNA catabolic process IEA
 biological_processGO:0000962 positive regulation of mitochondrial RNA catabolic process IEA
 biological_processGO:0000964 mitochondrial RNA 5"-end processing IEA
 biological_processGO:0000965 mitochondrial RNA 3"-end processing IEA
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0006401 RNA catabolic process IEA
 biological_processGO:0006402 mRNA catabolic process IEA
 biological_processGO:0034599 cellular response to oxidative stress IEA
 biological_processGO:0035458 cellular response to interferon-beta IEA
 biological_processGO:0035927 RNA import into mitochondrion IEA
 biological_processGO:0035928 rRNA import into mitochondrion IEA
 biological_processGO:0043457 regulation of cellular respiration IEA
 biological_processGO:0043631 RNA polyadenylation IEA
 biological_processGO:0045926 negative regulation of growth IEA
 biological_processGO:0051260 protein homooligomerization IEA
 biological_processGO:0061014 positive regulation of mRNA catabolic process IEA
 biological_processGO:0070207 protein homotrimerization IEA
 biological_processGO:0070584 mitochondrion morphogenesis IEA
 biological_processGO:0071042 nuclear polyadenylation-dependent mRNA catabolic process IEA
 biological_processGO:0071850 mitotic cell cycle arrest IEA
 biological_processGO:0097222 mitochondrial mRNA polyadenylation IEA
 biological_processGO:2000627 positive regulation of miRNA catabolic process IEA
 biological_processGO:2000772 regulation of cellular senescence IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005758 mitochondrial intermembrane space IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0045025 mitochondrial degradosome IEA
 molecular_functionGO:0000175 3"-5"-exoribonuclease activity IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0004654 polyribonucleotide nucleotidyltransferase activity IEA
 molecular_functionGO:0008266 poly(U) RNA binding IEA
 molecular_functionGO:0034046 poly(G) binding IEA
 molecular_functionGO:0035198 miRNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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