ENSMUSG00000001604


Mus musculus

Features
Gene ID: ENSMUSG00000001604
  
Biological name :Tcea3
  
Synonyms : P23881 / Tcea3 / Transcription elongation factor A protein 3
  
Possible biological names infered from orthology : O75764 / transcription elongation factor A3
  
Species: Mus musculus
  
Chr. number: 4
Strand: 1
Band: D3
Gene start: 136247729
Gene end: 136274898
  
Corresponding Affymetrix probe sets: 10509204 (MoGene1.0st)   1424531_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000099592
Ensembl peptide - ENSMUSP00000122718
NCBI entrez gene - 21401     See in Manteia.
MGI - MGI:1196908
RefSeq - XM_006538712
RefSeq - NM_011542
RefSeq - XM_006538710
RefSeq - XM_006538711
RefSeq Peptide - NP_035672
swissprot - A2AW45
swissprot - P23881
Ensembl - ENSMUSG00000001604
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tcea3ENSDARG00000004724Danio rerio
 TCEA3ENSG00000204219Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Tcea1 / P10711 / Transcription elongation factor A protein 1 / P23193* / transcription elongation factor A1*ENSMUSG0000003381349
Tcea2 / Q9QVN7 / transcription elongation factor A (SII), 2 / Q15560* / transcription elongation factor A2*ENSMUSG0000005954049
Q3US16 / Tceanc / Transcription elongation factor A N-terminal and central domain-containing protein / Q8N8B7* / transcription elongation factor A N-terminal and central domain containing*ENSMUSG0000005122430


Protein motifs (from Interpro)
Interpro ID Name
 IPR001222  Zinc finger, TFIIS-type
 IPR003617  Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type
 IPR003618  Transcription elongation factor S-II, central domain
 IPR006289  Transcription elongation factor, TFIIS
 IPR017923  Transcription factor IIS, N-terminal
 IPR035100  Transcription elongation factor, IIS-type
 IPR035441  TFIIS/LEDGF domain superfamily
 IPR036575  Transcription elongation factor S-II, central domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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