ENSMUSG00000003824


Mus musculus

Features
Gene ID: ENSMUSG00000003824
  
Biological name :Syce2
  
Synonyms : Q505B8 / Syce2 / Synaptonemal complex central element protein 2
  
Possible biological names infered from orthology : Q6PIF2
  
Species: Mus musculus
  
Chr. number: 8
Strand: 1
Band: C3
Gene start: 84872111
Gene end: 84888221
  
Corresponding Affymetrix probe sets: 10573451 (MoGene1.0st)   1429270_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000003922
Ensembl peptide - ENSMUSP00000122159
Ensembl peptide - ENSMUSP00000131438
NCBI entrez gene - 71846     See in Manteia.
MGI - MGI:1919096
RefSeq - NM_001168244
RefSeq - NM_001168246
RefSeq - NM_027954
RefSeq Peptide - NP_082230
RefSeq Peptide - NP_001161716
RefSeq Peptide - NP_001161718
swissprot - Q505B8
swissprot - F8WHI9
swissprot - E9PYH4
Ensembl - ENSMUSG00000003824
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 syce2ENSDARG00000103187Danio rerio
 SYCE2ENSG00000161860Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR034609  Synaptonemal complex central element protein 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0007130 synaptonemal complex assembly IEA
 biological_processGO:0051301 cell division IEA
 biological_processGO:0051321 meiotic cell cycle IEA
 cellular_componentGO:0000795 synaptonemal complex ISS
 cellular_componentGO:0000801 central element IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005694 chromosome IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001127 small ovary "reduced size of the female reproductive gland containing the germ cells" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:35782]
Show

Allelic Composition: Thtm1Srt/Thtm1Srt
Genetic Background: involves: 129S2/SvPas * C57BL/6J

 MP:0001155 arrest of spermatogenesis "block of the process by which spermatogonial stem cells divide and differentiate into spermatozoa" [J:62271]
Show

Allelic Composition: Spo11tm1Mjn/Spo11tm1Mjn
Genetic Background: involves: 129X1/SvJ * C57BL/6JOlaHsd

 MP:0001925 male infertility "inability of male to produce live offspring" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:60409]
Show

Allelic Composition: Thtm1Srt/Thtm1Srt
Genetic Background: involves: 129S2/SvPas * C57BL/6J

 MP:0001926 female infertility "inability of female to produce live offspring" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:34193]
Show

Allelic Composition: Thtm1Srt/Thtm1Srt
Genetic Background: involves: 129S2/SvPas * C57BL/6J

 MP:0004852 decreased testis weight "reduced average weight of the male reproductive glands" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Thtm1Srt/Thtm1Srt
Genetic Background: involves: 129S2/SvPas * C57BL/6J

 MP:0005168 abnormal female meiosis "malfunction in the process of nuclear division that results in ova with one half the normal chromosome number of the original cell" [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
Show

Allelic Composition: Thtm1Srt/Thtm1Srt
Genetic Background: involves: 129S2/SvPas * C57BL/6J

 MP:0005169 abnormal male meiosis "malfunction in the process of nuclear division that results in sperm with one half the normal chromosome number of the original cell" [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
Show

Allelic Composition: Thtm1Srt/Thtm1Srt
Genetic Background: involves: 129S2/SvPas * C57BL/6J

 MP:0008261 arrest of male meiosis "cessation of the progression of the process of nuclear division that results in sperm with one half the normal chromosome number of the original cell" [ISBN:0-683-40008-8 "Stedman s Medical Dictionary, 27th edition"]
Show

Allelic Composition: Thtm1Srt/Thtm1Srt
Genetic Background: involves: 129S2/SvPas * C57BL/6J

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000078938 Syce3 / B5KM66 / Synaptonemal complex central element protein 3 / A1L190*  / complex
 ENSMUSG00000032065 Tex12 / Q9CR81 / Testis-expressed protein 12 / Q9BXU0* / testis expressed 12*  / complex
 ENSMUSG00000025480 Syce1 / Q9D495 / Synaptonemal complex central element protein 1 / Q8N0S2*  / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr