ENSMUSG00000008958


Mus musculus

Features
Gene ID: ENSMUSG00000008958
  
Biological name :Vps72
  
Synonyms : Q62481 / vacuolar protein sorting 72 / Vps72
  
Possible biological names infered from orthology : Q15906 / vacuolar protein sorting 72 homolog
  
Species: Mus musculus
  
Chr. number: 3
Strand: 1
Band: F2.1
Gene start: 95111022
Gene end: 95123051
  
Corresponding Affymetrix probe sets: 10494153 (MoGene1.0st)   1418284_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000009102
NCBI entrez gene - 21427     See in Manteia.
MGI - MGI:1202305
RefSeq - NM_009336
RefSeq - XM_017319529
RefSeq Peptide - NP_033362
swissprot - Q62481
Ensembl - ENSMUSG00000008958
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 vps72ENSDARG00000063718Danio rerio
 VPS72ENSDARG00000088567Danio rerio
 VPS72ENSGALG00000000793Gallus gallus
 VPS72ENSG00000163159Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR008895  Vps72/YL1 family
 IPR013272  Vps72/YL1, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006338 chromatin remodeling IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0035019 somatic stem cell population maintenance IDA
 biological_processGO:0043486 histone exchange IBA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0032991 protein-containing complex IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0042393 histone binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0011100 complete preweaning lethality "death of all organisms of a given genotype in a population between fertilization and weaning age (Mus: approximately 3-4 weeks of age)" [MGI:csmith]
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Allelic Composition: Trip13tm1.1(KOMP)Vlcg/Trip13tm1.1(KOMP)Vlcg
Genetic Background: C57BL/6N-Trip13tm1.1(KOMP)Vlcg/Ucd

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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