ENSMUSG00000013622


Mus musculus

Features
Gene ID: ENSMUSG00000013622
  
Biological name :Atraid
  
Synonyms : All-trans retinoic acid-induced differentiation factor / Atraid / Q6PGD0
  
Possible biological names infered from orthology : Q6UW56
  
Species: Mus musculus
  
Chr. number: 5
Strand: 1
Band: B1
Gene start: 31048312
Gene end: 31054623
  
Corresponding Affymetrix probe sets: 10520638 (MoGene1.0st)   10520648 (MoGene1.0st)   1428380_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000144085
Ensembl peptide - ENSMUSP00000144431
Ensembl peptide - ENSMUSP00000144333
Ensembl peptide - ENSMUSP00000144256
Ensembl peptide - ENSMUSP00000013766
Ensembl peptide - ENSMUSP00000143956
NCBI entrez gene - 381629     See in Manteia.
MGI - MGI:1918918
RefSeq - NM_027855
RefSeq - NM_212470
RefSeq Peptide - NP_082131
RefSeq Peptide - NP_997635
swissprot - D3Z6U7
swissprot - Q6PGD0
swissprot - D3YYN2
swissprot - A8C1S6
swissprot - F6RYG0
swissprot - G3UXG8
Ensembl - ENSMUSG00000013622
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 A3KNS9ENSDARG00000043388Danio rerio
 ATRAIDENSG00000138085Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000742  EGF-like domain
 IPR013032  EGF-like, conserved site
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 biological_processGO:0010468 regulation of gene expression ISS
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0030501 positive regulation of bone mineralization ISS
 biological_processGO:0033689 negative regulation of osteoblast proliferation ISS
 biological_processGO:0045669 positive regulation of osteoblast differentiation ISS
 biological_processGO:1903363 negative regulation of cellular protein catabolic process ISO
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005635 nuclear envelope ISS
 cellular_componentGO:0005765 lysosomal membrane IDA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0048471 perinuclear region of cytoplasm ISS
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001304 cataracts "complete or partial opacity of the lens" [J:65031]
Show

Allelic Composition: Mecp2tm1.1Irsf/Y
Genetic Background: involves: 129S/Sv * C57BL/6

Allelic Composition: AtraidGt(OST23679)Lex/Atraid+
Genetic Background: involves: 129S5/SvEvBrd * C57BL/6J

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr