ENSMUSG00000018727


Mus musculus

Features
Gene ID: ENSMUSG00000018727
  
Biological name :Cpsf4l
  
Synonyms : cleavage and polyadenylation specific factor 4-like / Cpsf4l
  
Possible biological names infered from orthology : A6NMK7
  
Species: Mus musculus
  
Chr. number: 11
Strand: -1
Band: E2
Gene start: 113698172
Gene end: 113710017
  
Corresponding Affymetrix probe sets: 10392721 (MoGene1.0st)   1425312_s_at (Mouse Genome 430 2.0 Array)   1425401_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000133451
Ensembl peptide - ENSMUSP00000018871
Ensembl peptide - ENSMUSP00000097819
Ensembl peptide - ENSMUSP00000102228
NCBI entrez gene - 52670     See in Manteia.
MGI - MGI:1277182
RefSeq - XM_017314659
RefSeq - XM_017314652
RefSeq - XM_017314653
RefSeq - XM_017314654
RefSeq - XM_017314655
RefSeq - XM_017314656
RefSeq - XM_017314657
RefSeq - XM_017314658
RefSeq - NM_001164532
RefSeq - NM_026682
RefSeq - NM_029794
RefSeq - XM_006533701
RefSeq - XM_006533704
RefSeq - XM_006533705
RefSeq - XM_006533706
RefSeq - XM_006533707
RefSeq - XM_006533709
RefSeq - XM_006533710
RefSeq - XM_006533711
RefSeq - XM_006533712
RefSeq - XM_011249128
RefSeq Peptide - NP_084070
RefSeq Peptide - NP_001158004
RefSeq Peptide - NP_080958
swissprot - A2A6P9
swissprot - Q9DBA5
swissprot - E9Q2N0
swissprot - G3UWW6
Ensembl - ENSMUSG00000018727
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CPSF4LENSGALG00000004441Gallus gallus
 A6NMK7ENSG00000187959Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Cpsf4 / Q8BQZ5 / Cleavage and polyadenylation specificity factor subunit 4 / O95639* / cleavage and polyadenylation specific factor 4*ENSMUSG0000002962539
Zc3h3 / Q8CHP0 / zinc finger CCCH type containing 3 / Q8IXZ2*ENSMUSG0000007560024


Protein motifs (from Interpro)
Interpro ID Name
 IPR000571  Zinc finger, CCCH-type
 IPR036855  Zinc finger, CCCH-type superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006378 mRNA polyadenylation IBA
 biological_processGO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEA
 biological_processGO:0098789 pre-mRNA cleavage required for polyadenylation IBA
 cellular_componentGO:0005847 mRNA cleavage and polyadenylation specificity factor complex IBA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0004521 endoribonuclease activity IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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