ENSMUSG00000029625


Mus musculus

Features
Gene ID: ENSMUSG00000029625
  
Biological name :Cpsf4
  
Synonyms : Cleavage and polyadenylation specificity factor subunit 4 / Cpsf4 / Q8BQZ5
  
Possible biological names infered from orthology : cleavage and polyadenylation specific factor 4 / O95639
  
Species: Mus musculus
  
Chr. number: 5
Strand: 1
Band: G2
Gene start: 145167213
Gene end: 145182041
  
Corresponding Affymetrix probe sets: 10527455 (MoGene1.0st)   1424469_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000125019
Ensembl peptide - ENSMUSP00000124966
Ensembl peptide - ENSMUSP00000125640
Ensembl peptide - ENSMUSP00000137910
Ensembl peptide - ENSMUSP00000069243
Ensembl peptide - ENSMUSP00000124899
NCBI entrez gene - 54188     See in Manteia.
MGI - MGI:1861602
RefSeq - XM_006504845
RefSeq - NM_001291248
RefSeq - NM_001291249
RefSeq - NM_178576
RefSeq Peptide - NP_848671
RefSeq Peptide - NP_001278177
RefSeq Peptide - NP_001278178
swissprot - E0CXT7
swissprot - F7B6Z5
swissprot - B2LVG6
swissprot - M0QWM8
swissprot - Q8BQZ5
swissprot - B2LVG5
Ensembl - ENSMUSG00000029625
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cpsf4ENSDARG00000020217Danio rerio
 CPSF4ENSGALG00000004714Gallus gallus
 CPSF4ENSG00000160917Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Cpsf4l / cleavage and polyadenylation specific factor 4-like / A6NMK7*ENSMUSG0000001872745
Zc3h3 / Q8CHP0 / zinc finger CCCH type containing 3 / Q8IXZ2*ENSMUSG0000007560025


Protein motifs (from Interpro)
Interpro ID Name
 IPR000571  Zinc finger, CCCH-type
 IPR001878  Zinc finger, CCHC-type
 IPR036855  Zinc finger, CCCH-type superfamily
 IPR036875  Zinc finger, CCHC-type superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006378 mRNA polyadenylation IBA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEA
 biological_processGO:0098789 pre-mRNA cleavage required for polyadenylation IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005847 mRNA cleavage and polyadenylation specificity factor complex IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0004521 endoribonuclease activity IBA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
mRNA Splicing - Major Pathway
mRNA 3-end processing
Processing of Intronless Pre-mRNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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