ENSGALG00000004714


Gallus gallus

Features
Gene ID: ENSGALG00000004714
  
Biological name :CPSF4
  
Synonyms : cleavage and polyadenylation specific factor 4 / CPSF4
  
Possible biological names infered from orthology : Cleavage and polyadenylation specificity factor subunit 4 / O95639 / Q8BQZ5
  
Species: Gallus gallus
  
Chr. number: 14
Strand: 1
Band:
Gene start: 4407002
Gene end: 4413387
  
Corresponding Affymetrix probe sets: Gga.12217.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000007498
NCBI entrez gene - 416494     See in Manteia.
RefSeq - NM_001277551
RefSeq Peptide - NP_001264480
swissprot - E1BV31
Ensembl - ENSGALG00000004714
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cpsf4ENSDARG00000020217Danio rerio
 CPSF4ENSG00000160917Homo sapiens
 Cpsf4ENSMUSG00000029625Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CPSF4L / cleavage and polyadenylation specific factor 4 like / A6NMK7*ENSGALG0000000444133
ZC3H3 / zinc finger CCCH domain-containing protein 3 / Q8CHP0* / Q8IXZ2* / zinc finger CCCH-type containing 3*ENSGALG0000004326521


Protein motifs (from Interpro)
Interpro ID Name
 IPR000571  Zinc finger, CCCH-type
 IPR001878  Zinc finger, CCHC-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006378 mRNA polyadenylation IBA
 biological_processGO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEA
 biological_processGO:0098789 pre-mRNA cleavage required for polyadenylation IBA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005847 mRNA cleavage and polyadenylation specificity factor complex IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0004521 endoribonuclease activity IBA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
mRNA Splicing - Major Pathway
mRNA 3-end processing
Processing of Intronless Pre-mRNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr