ENSMUSG00000020472


Mus musculus

Features
Gene ID: ENSMUSG00000020472
  
Biological name :Zkscan17
  
Synonyms : Q5SXI5 / zinc finger with KRAB and SCAN domains 17 / Zkscan17
  
Possible biological names infered from orthology : Q96IT1 / zinc finger protein 496 / ZNF496
  
Species: Mus musculus
  
Chr. number: 11
Strand: -1
Band: B1.3
Gene start: 59485520
Gene end: 59526751
  
Corresponding Affymetrix probe sets: 10386402 (MoGene1.0st)   10386414 (MoGene1.0st)   1434088_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000013262
Ensembl peptide - ENSMUSP00000098709
NCBI entrez gene - 268417     See in Manteia.
MGI - MGI:2679270
RefSeq - XM_006533386
RefSeq - NM_001130529
RefSeq - NM_001291014
RefSeq - NM_172941
RefSeq - XM_006533384
RefSeq - XM_006533385
RefSeq Peptide - NP_001124001
RefSeq Peptide - NP_001277943
RefSeq Peptide - NP_766529
swissprot - Q5SXI5
Ensembl - ENSMUSG00000020472
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q96IT1ENSG00000162714Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Zfp202 / zinc finger protein 202 / O95125* / ZNF202*ENSMUSG0000002560229
Zfp263 / zinc finger protein 263 / O14978* / ZNF263*ENSMUSG0000002252928
Zscan25 / zinc finger and SCAN domain containing 25 / Q6NSZ9*ENSMUSG0000007042025
Q810A1 / Zkscan6 / zinc finger with KRAB and SCAN domains 6 / ZNF18* / P17022* / zinc finger protein 18*ENSMUSG0000001834724
Zfp213 / zinc finger protein 213 / O14771* / ZNF213*ENSMUSG0000007125624
Zfp174 / zinc finger protein 174 / Q15697* / ZNF174*ENSMUSG0000005493921
Zfp446 / zinc finger protein 446 / Q9NWS9* / ZNF446*ENSMUSG0000003396120
Q8BZ34 / Zfp641 / zinc finger protein 641 / Q96N77* / ZNF641*ENSMUSG0000002298717
Zscan18 / zinc finger and SCAN domain containing 18 / Q8TBC5*ENSMUSG0000007082216
Scand1 / SCAN domain-containing 1 / P57086*ENSMUSG000000462298


Protein motifs (from Interpro)
Interpro ID Name
 IPR001909  Krueppel-associated box
 IPR003309  SCAN domain
 IPR008916  Retrovirus capsid, C-terminal
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013087  Zinc finger C2H2-type
 IPR027767  Zinc finger protein 496
 IPR036051  KRAB domain superfamily
 IPR036236  Zinc finger C2H2 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IDA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IDA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0016604 nuclear body IDA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0043621 protein self-association IPI
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Generic Transcription Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0011100 complete preweaning lethality "death of all organisms of a given genotype in a population between fertilization and weaning age (Mus: approximately 3-4 weeks of age)" [MGI:csmith]
Show

Allelic Composition: Zfp719tm1b(EUCOMM)Wtsi/Zfp719tm1b(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Zfp719tm1b(EUCOMM)Wtsi/Wtsi

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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