ENSMUSG00000018347


Mus musculus

Features
Gene ID: ENSMUSG00000018347
  
Biological name :Zkscan6
  
Synonyms : Q810A1 / zinc finger with KRAB and SCAN domains 6 / Zkscan6
  
Possible biological names infered from orthology : P17022 / zinc finger protein 18 / ZNF18
  
Species: Mus musculus
  
Chr. number: 11
Strand: 1
Band: B3
Gene start: 65807175
Gene end: 65829239
  
Corresponding Affymetrix probe sets: 10376988 (MoGene1.0st)   1418033_s_at (Mouse Genome 430 2.0 Array)   1448920_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000018491
Ensembl peptide - ENSMUSP00000071406
NCBI entrez gene - 52712     See in Manteia.
MGI - MGI:1289293
RefSeq - XM_017314660
RefSeq - NM_001302374
RefSeq - NM_001302375
RefSeq - NM_026107
RefSeq - XM_006533717
RefSeq Peptide - NP_080383
RefSeq Peptide - NP_001289303
RefSeq Peptide - NP_001289304
swissprot - Q810A1
Ensembl - ENSMUSG00000018347
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ZNF18ENSG00000154957Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Zfp263 / zinc finger protein 263 / O14978* / ZNF263*ENSMUSG0000002252933
Zfp202 / zinc finger protein 202 / O95125* / ZNF202*ENSMUSG0000002560231
Zscan25 / zinc finger and SCAN domain containing 25 / Q6NSZ9*ENSMUSG0000007042029
Zfp213 / zinc finger protein 213 / O14771* / ZNF213*ENSMUSG0000007125626
Q5SXI5 / Zkscan17 / zinc finger with KRAB and SCAN domains 17 / ZNF496* / Q96IT1* / zinc finger protein 496*ENSMUSG0000002047225
Zfp174 / zinc finger protein 174 / Q15697* / ZNF174*ENSMUSG0000005493923
Zfp446 / zinc finger protein 446 / Q9NWS9* / ZNF446*ENSMUSG0000003396121
Q8BZ34 / Zfp641 / zinc finger protein 641 / Q96N77* / ZNF641*ENSMUSG0000002298718
Zscan18 / zinc finger and SCAN domain containing 18 / Q8TBC5*ENSMUSG0000007082217
Scand1 / SCAN domain-containing 1 / P57086*ENSMUSG000000462298


Protein motifs (from Interpro)
Interpro ID Name
 IPR001909  Krueppel-associated box
 IPR003309  SCAN domain
 IPR008916  Retrovirus capsid, C-terminal
 IPR013087  Zinc finger C2H2-type
 IPR027764  Zinc finger protein 18/446
 IPR036051  KRAB domain superfamily
 IPR036236  Zinc finger C2H2 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Generic Transcription Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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