ENSMUSG00000024135


Mus musculus

Features
Gene ID: ENSMUSG00000024135
  
Biological name :Srbd1
  
Synonyms : S1 RNA binding domain 1 / Srbd1
  
Possible biological names infered from orthology : Q8N5C6
  
Species: Mus musculus
  
Chr. number: 17
Strand: -1
Band: E4
Gene start: 85984665
Gene end: 86145175
  
Corresponding Affymetrix probe sets: 10453399 (MoGene1.0st)   1436375_at (Mouse Genome 430 2.0 Array)   1436376_s_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000092810
NCBI entrez gene - 78586     See in Manteia.
MGI - MGI:1925836
RefSeq - XM_017317728
RefSeq - NM_030133
RefSeq - XM_011246728
RefSeq - XM_011246730
RefSeq Peptide - NP_084409
swissprot - F8WGW3
Ensembl - ENSMUSG00000024135
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 si:ch211-117n7.8ENSDARG00000092855Danio rerio
 srbd1ENSDARG00000079827Danio rerio
 SRBD1ENSGALG00000009990Gallus gallus
 SRBD1ENSG00000068784Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003029  S1 domain
 IPR006641  YqgF/RNase H-like domain
 IPR010994  RuvA domain 2-like
 IPR012337  Ribonuclease H-like superfamily
 IPR012340  Nucleic acid-binding, OB-fold
 IPR018974  Tex-like protein, N-terminal
 IPR022967  RNA-binding domain, S1
 IPR023319  Tex-like protein, HTH domain superfamily
 IPR023323  Tex-like domain superfamily
 IPR032639  Tex protein, YqgF-like domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006139 nucleobase-containing compound metabolic process IEA
 molecular_functionGO:0003676 nucleic acid binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr