ENSMUSG00000028772


Mus musculus

Features
Gene ID: ENSMUSG00000028772
  
Biological name :Zcchc17
  
Synonyms : Q9ESX4 / Zcchc17 / zinc finger, CCHC domain containing 17
  
Possible biological names infered from orthology : Q9NP64 / zinc finger CCHC-type containing 17
  
Species: Mus musculus
  
Chr. number: 4
Strand: -1
Band: D2.2
Gene start: 130315383
Gene end: 130359943
  
Corresponding Affymetrix probe sets: 10516778 (MoGene1.0st)   1446066_at (Mouse Genome 430 2.0 Array)   1452084_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000120807
NCBI entrez gene - 619605     See in Manteia.
MGI - MGI:1919955
RefSeq - XM_006503260
RefSeq - NM_153160
RefSeq - XM_006503257
RefSeq - XM_006503258
RefSeq - XM_006503259
RefSeq Peptide - NP_694800
swissprot - Q3TG23
swissprot - Q9ESX4
Ensembl - ENSMUSG00000028772
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 zcchc17ENSDARG00000018936Danio rerio
 ZCCHC17ENSGALG00000000618Gallus gallus
 Q9NP64ENSG00000121766Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001878  Zinc finger, CCHC-type
 IPR003029  S1 domain
 IPR012340  Nucleic acid-binding, OB-fold
 IPR022967  RNA-binding domain, S1
 IPR036875  Zinc finger, CCHC-type superfamily
 IPR037320  Nucleolar protein of 40kDa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0022625 cytosolic large ribosomal subunit IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding TAS
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0003674 oxidative stress "condition characterized by an accumulation of free radical groups in the body, which creates a potentially unstable and damaging cellular environment linked to tissue damage, accelerated aging, and degenerative disease; can result from many factors, including exposure to alcohol, medications, poor nutrition, trauma, cold or toxins; may be indicated by low antioxidant levels measured in blood plasma" [MeSH:National Library of Medicine - Medical Subject Headings , 2003]
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Allelic Composition: Saa3tm1(KOMP)Vlcg/Saa3+
Genetic Background: involves: C57BL/6NTac

 MP:0005076 abnormal cell differentiation "anomaly in the process whereby relatively unspecialized cells, e. g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism s life history" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
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Allelic Composition: Saa3tm1(KOMP)Vlcg/Saa3+
Genetic Background: involves: C57BL/6NTac

 MP:0008008 early cellular replicative senescence "increase in the progression of the process in which a cell progresses from its inception to the end of its lifespan, which occurs as the cell continues cycles of growth and division" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"]
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Allelic Composition: Saa3tm1(KOMP)Vlcg/Saa3+
Genetic Background: involves: C57BL/6NTac

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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