ENSMUSG00000031939


Mus musculus

Features
Gene ID: ENSMUSG00000031939
  
Biological name :Taf1d
  
Synonyms : Q9D4V4 / Taf1d / TATA box-binding protein-associated factor RNA polymerase I subunit D
  
Possible biological names infered from orthology : Q9H5J8
  
Species: Mus musculus
  
Chr. number: 9
Strand: 1
Band: A2
Gene start: 15306214
Gene end: 15316991
  
Corresponding Affymetrix probe sets: 10391985 (MoGene1.0st)   10405739 (MoGene1.0st)   10409988 (MoGene1.0st)   10471503 (MoGene1.0st)   10583297 (MoGene1.0st)   10583310 (MoGene1.0st)   10583312 (MoGene1.0st)   10583314 (MoGene1.0st)   10583316 (MoGene1.0st)   10583318 (MoGene1.0st)   1430147_a_at (Mouse Genome 430 2.0 Array)   1430271_x_at (Mouse Genome 430 2.0 Array)   1436558_at (Mouse Genome 430 2.0 Array)   1442289_at (Mouse Genome 430 2.0 Array)   1452635_x_at (Mouse Genome 430 2.0 Array)   1452987_at (Mouse Genome 430 2.0 Array)   1457292_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000150356
Ensembl peptide - ENSMUSP00000150937
Ensembl peptide - ENSMUSP00000150890
Ensembl peptide - ENSMUSP00000150723
Ensembl peptide - ENSMUSP00000150491
Ensembl peptide - ENSMUSP00000034415
Ensembl peptide - ENSMUSP00000129141
Ensembl peptide - ENSMUSP00000149377
Ensembl peptide - ENSMUSP00000149380
NCBI entrez gene - 75316     See in Manteia.
MGI - MGI:1922566
RefSeq - XM_011242620
RefSeq - NM_027261
RefSeq - NM_029248
RefSeq - XM_006510663
RefSeq Peptide - NP_083524
RefSeq Peptide - NP_081537
swissprot - A0A1L1SUD1
swissprot - Q9D4V4
swissprot - A0A1L1STW1
swissprot - A0A1L1SRB1
swissprot - A0A1L1SUU1
Ensembl - ENSMUSG00000031939
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TAF1DENSGALG00000017220Gallus gallus
 TAF1DENSG00000166012Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR027976  TATA box-binding protein-associated factor 1D


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005668 RNA polymerase transcription factor SL1 complex IEA
 cellular_componentGO:0005815 microtubule organizing center ISO
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
B-WICH complex positively regulates rRNA expression
RNA Polymerase I Transcription Initiation
RNA Polymerase I Promoter Escape
RNA Polymerase I Chain Elongation
RNA Polymerase I Transcription Termination


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr