ENSMUSG00000034088


Mus musculus

Features
Gene ID: ENSMUSG00000034088
  
Biological name :Hdlbp
  
Synonyms : Hdlbp / Mus musculus high density lipoprotein (HDL) binding protein (Hdlbp), transcript variant 3, mRNA. / Q8VDJ3
  
Possible biological names infered from orthology : high density lipoprotein binding protein / Q00341
  
Species: Mus musculus
  
Chr. number: 1
Strand: -1
Band: D
Gene start: 93405940
Gene end: 93478815
  
Corresponding Affymetrix probe sets: 10356800 (MoGene1.0st)   1415987_at (Mouse Genome 430 2.0 Array)   1415988_at (Mouse Genome 430 2.0 Array)   1419806_at (Mouse Genome 430 2.0 Array)   1419869_s_at (Mouse Genome 430 2.0 Array)   1449615_s_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000127903
Ensembl peptide - ENSMUSP00000140946
Ensembl peptide - ENSMUSP00000140399
Ensembl peptide - ENSMUSP00000139777
Ensembl peptide - ENSMUSP00000139719
Ensembl peptide - ENSMUSP00000139671
Ensembl peptide - ENSMUSP00000139448
Ensembl peptide - ENSMUSP00000043047
NCBI entrez gene - 110611     See in Manteia.
MGI - MGI:99256
RefSeq - XM_006529077
RefSeq - NM_001301364
RefSeq - NM_001357556
RefSeq - NM_133808
RefSeq - XM_006529074
RefSeq - XM_006529075
RefSeq - XM_006529076
RefSeq Peptide - NP_001288293
RefSeq Peptide - NP_001344485
RefSeq Peptide - NP_598569
swissprot - A0A087WPC5
swissprot - A0A087WP83
swissprot - A0A087WNQ4
swissprot - A0A087WQY9
swissprot - Q8VDJ3
swissprot - Q3U4Z7
swissprot - A0A087WS92
swissprot - A0A087WPH2
Ensembl - ENSMUSG00000034088
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 hdlbpaENSDARG00000009830Danio rerio
 HDLBPENSGALG00000005823Gallus gallus
 HDLBPENSG00000115677Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Gm382ENSMUSG0000006279143
4921511C20Rik / RIKEN cDNA 4921511C20 geneENSMUSG0000004981517


Protein motifs (from Interpro)
Interpro ID Name
 IPR004087  K Homology domain
 IPR004088  K Homology domain, type 1
 IPR015946  K homology domain-like, alpha/beta
 IPR036612  K Homology domain, type 1 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006629 lipid metabolic process IEA
 biological_processGO:0006869 lipid transport IEA
 biological_processGO:0008202 steroid metabolic process IEA
 biological_processGO:0008203 cholesterol metabolic process IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol ISO
 cellular_componentGO:0034364 high-density lipoprotein particle IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0045296 cadherin binding ISO


Pathways (from Reactome)
Pathway description
HDL clearance


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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