ENSMUSG00000035161


Mus musculus

Features
Gene ID: ENSMUSG00000035161
  
Biological name :Ints6
  
Synonyms : Integrator complex subunit 6 / Ints6 / Q6PCM2
  
Possible biological names infered from orthology : Q9UL03
  
Species: Mus musculus
  
Chr. number: 14
Strand: -1
Band: D1
Gene start: 62676330
Gene end: 62761169
  
Corresponding Affymetrix probe sets: 10420694 (MoGene1.0st)   1423275_at (Mouse Genome 430 2.0 Array)   1436089_at (Mouse Genome 430 2.0 Array)   1443128_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000086788
Ensembl peptide - ENSMUSP00000152954
NCBI entrez gene - 18130     See in Manteia.
MGI - MGI:1202397
RefSeq - XM_017315909
RefSeq - NM_008715
RefSeq - XM_011244986
RefSeq - XM_017315908
RefSeq - XM_006518680
RefSeq - XM_006518682
RefSeq - XM_006518683
RefSeq - XM_011244985
RefSeq Peptide - NP_032741
swissprot - Q6PCM2
Ensembl - ENSMUSG00000035161
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ints6ENSDARG00000013025Danio rerio
 INTS6ENSGALG00000017018Gallus gallus
 INTS6ENSG00000102786Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Ints6l / Q8BND4 / Integrator complex subunit 6-like ENSMUSG0000003596763
Gm648 / SAGE1* / Q5HYN5* / Q5DJT8* / P0DMV2* / P0DMV1* / P0DMV0* / CT45A1* / CT45A2* / CT45A3* / CT45A5* / CT45A6* / CT45A7* / CT45A8* / CT45A9* / P0DMU8* / Q9NXZ1* / Q8NHU0* / P0DMU9* / P0...ENSMUSG000000640167
Gm10477 / SAGE1* / Q5HYN5* / Q5DJT8* / P0DMV2* / P0DMV1* / P0DMV0* / CT45A1* / CT45A2* / CT45A3* / CT45A5* / CT45A6* / CT45A7* / CT45A8* / CT45A9* / P0DMU8* / Q9NXZ1* / Q8NHU0* / P0DMU9* / ...ENSMUSG000000731732


Protein motifs (from Interpro)
Interpro ID Name
 IPR002035  von Willebrand factor, type A
 IPR029307  INTS6/SAGE1/DDX26B/CT45, C-terminal
 IPR036465  von Willebrand factor A-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016180 snRNA processing IEA
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0015629 actin cytoskeleton IEA
 cellular_componentGO:0032039 integrator complex IEA


Pathways (from Reactome)
Pathway description
RNA polymerase II transcribes snRNA genes


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0011096 complete embryonic lethality before somite formation "death of all organisms of a given genotype in a population between the point of implantation and somite formation (Mus: E4.5 to less than E8)" [MGI:csmith]
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Allelic Composition: Hsp90aa1Tg(Tyr)2396BOve/Hsp90aa1Tg(Tyr)2396BOve
Genetic Background: FVB/N-Hsp90aa1Tg(Tyr)2396BOve

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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