ENSMUSG00000036315


Mus musculus

Features
Gene ID: ENSMUSG00000036315
  
Biological name :Znrd1
  
Synonyms : Q791N7 / zinc ribbon domain containing, 1 / Znrd1
  
Possible biological names infered from orthology : Q9P1U0
  
Species: Mus musculus
  
Chr. number: 17
Strand: -1
Band: B1
Gene start: 36954356
Gene end: 36958559
  
Corresponding Affymetrix probe sets: 10450819 (MoGene1.0st)   1422517_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000109299
Ensembl peptide - ENSMUSP00000133644
Ensembl peptide - ENSMUSP00000133651
NCBI entrez gene - 66136     See in Manteia.
MGI - MGI:1913386
RefSeq - XM_006524792
RefSeq - NM_001355422
RefSeq - NM_023162
RefSeq Peptide - NP_001342351
RefSeq Peptide - NP_075651
swissprot - Q791N7
swissprot - G3UXD3
Ensembl - ENSMUSG00000036315
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 znrd1ENSDARG00000036070Danio rerio
 ZNRD1ENSG00000066379Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001222  Zinc finger, TFIIS-type
 IPR012164  DNA-directed RNA polymerase subunit/transcription factor S
 IPR019761  DNA-directed RNA polymerase M, 15kDa subunit, conserved site
 IPR034004  Pol I subunit A12, C-terminal zinc ribbon


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000183 chromatin silencing at rDNA TAS
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006363 termination of RNA polymerase I transcription IBA
 biological_processGO:0006379 mRNA cleavage IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005736 DNA-directed RNA polymerase I complex IBA
 molecular_functionGO:0001054 RNA polymerase I activity IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003899 DNA-directed 5"-3" RNA polymerase activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
B-WICH complex positively regulates rRNA expression
RNA Polymerase I Transcription Initiation
RNA Polymerase I Promoter Escape
RNA Polymerase I Chain Elongation
RNA Polymerase I Transcription Termination


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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