ENSMUSG00000038042


Mus musculus

Features
Gene ID: ENSMUSG00000038042
  
Biological name :Ptpdc1
  
Synonyms : Protein tyrosine phosphatase domain-containing protein 1 / Ptpdc1 / Q6NZK8
  
Possible biological names infered from orthology : A2A3K4 / protein tyrosine phosphatase domain containing 1
  
Species: Mus musculus
  
Chr. number: 13
Strand: -1
Band: A5
Gene start: 48577872
Gene end: 48625664
  
Corresponding Affymetrix probe sets: 10409065 (MoGene1.0st)   1433823_at (Mouse Genome 430 2.0 Array)   1435107_at (Mouse Genome 430 2.0 Array)   1437613_s_at (Mouse Genome 430 2.0 Array)   1445362_at (Mouse Genome 430 2.0 Array)   1454726_s_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000047374
Ensembl peptide - ENSMUSP00000152409
Ensembl peptide - ENSMUSP00000152771
NCBI entrez gene - 218232     See in Manteia.
MGI - MGI:2145430
RefSeq - XM_006516922
RefSeq - NM_001301781
RefSeq - NM_207232
RefSeq Peptide - NP_001288710
RefSeq Peptide - NP_997115
swissprot - Q6NZK8
swissprot - A0A1Y7VLX3
Ensembl - ENSMUSG00000038042
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ptpdc1aENSDARG00000061656Danio rerio
 ptpdc1bENSDARG00000058873Danio rerio
 PTPDC1ENSGALG00000005128Gallus gallus
 A2A3K4ENSG00000158079Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000340  Dual specificity phosphatase, catalytic domain
 IPR000387  Tyrosine specific protein phosphatases domain
 IPR003595  Protein-tyrosine phosphatase, catalytic
 IPR016130  Protein-tyrosine phosphatase, active site
 IPR020422  Dual specificity protein phosphatase domain
 IPR029021  Protein-tyrosine phosphatase-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006470 protein dephosphorylation IEA
 biological_processGO:0007224 smoothened signaling pathway IMP
 biological_processGO:0016311 dephosphorylation IEA
 biological_processGO:0030030 cell projection organization IEA
 biological_processGO:0035335 peptidyl-tyrosine dephosphorylation IEA
 biological_processGO:0060271 cilium assembly IMP
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005654 nucleoplasm ISO
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0004721 phosphoprotein phosphatase activity IEA
 molecular_functionGO:0004725 protein tyrosine phosphatase activity IBA
 molecular_functionGO:0008138 protein tyrosine/serine/threonine phosphatase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0016791 phosphatase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001146 abnormal testis morphology "anomalous structure of the male reproductive glands" [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
Show

Allelic Composition: Prkab1tm1b(KOMP)Wtsi/Prkab1tm1b(KOMP)Wtsi
Genetic Background: C57BL/6N-Prkab1tm1b(KOMP)Wtsi/Orl

 MP:0001147 small testis "reduced size of the male reproductive glands" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:58959]
Show

Allelic Composition: Prkab1tm1b(KOMP)Wtsi/Prkab1tm1b(KOMP)Wtsi
Genetic Background: C57BL/6N-Prkab1tm1b(KOMP)Wtsi/Orl

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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