ENSMUSG00000038628


Mus musculus

Features
Gene ID: ENSMUSG00000038628
  
Biological name :Polr3k
  
Synonyms : DNA-directed RNA polymerase III subunit RPC10 / Polr3k / Q9CQZ7
  
Possible biological names infered from orthology : Q9Y2Y1 / RNA polymerase III subunit K
  
Species: Mus musculus
  
Chr. number: 2
Strand: 1
Band: H4
Gene start: 181864337
Gene end: 181870830
  
Corresponding Affymetrix probe sets: 10479736 (MoGene1.0st)   1422752_at (Mouse Genome 430 2.0 Array)   1422753_a_at (Mouse Genome 430 2.0 Array)   1439266_a_at (Mouse Genome 430 2.0 Array)   1440735_at (Mouse Genome 430 2.0 Array)   1450737_at (Mouse Genome 430 2.0 Array)   1456731_x_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000044582
NCBI entrez gene - 67005     See in Manteia.
MGI - MGI:1914255
RefSeq - NM_025901
RefSeq Peptide - NP_080177
swissprot - Q9CQZ7
Ensembl - ENSMUSG00000038628
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 polr3kENSDARG00000037835Danio rerio
 POLR3KENSGALG00000017681Gallus gallus
 POLR3KENSG00000161980Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001222  Zinc finger, TFIIS-type
 IPR001529  DNA-directed RNA polymerase, M/15kDa subunit
 IPR012164  DNA-directed RNA polymerase subunit/transcription factor S
 IPR019761  DNA-directed RNA polymerase M, 15kDa subunit, conserved site
 IPR034014  Pol III subunit C11, C-terminal zinc ribbon


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002376 immune system process IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006379 mRNA cleavage IEA
 biological_processGO:0006386 termination of RNA polymerase III transcription IBA
 biological_processGO:0045087 innate immune response IEA
 biological_processGO:0051607 defense response to virus IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005666 DNA-directed RNA polymerase III complex IBA
 cellular_componentGO:0005730 nucleolus IEA
 molecular_functionGO:0001056 RNA polymerase III activity IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003899 DNA-directed 5"-3" RNA polymerase activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
RNA Polymerase III Transcription Initiation From Type 1 Promoter
RNA Polymerase III Transcription Initiation From Type 2 Promoter
RNA Polymerase III Transcription Initiation From Type 3 Promoter


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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