ENSMUSG00000039096


Mus musculus

Features
Gene ID: ENSMUSG00000039096
  
Biological name :Rsad1
  
Synonyms : Q5SUV1 / Radical S-adenosyl methionine domain-containing protein 1, mitochondrial / Rsad1
  
Possible biological names infered from orthology : Q9HA92 / radical S-adenosyl methionine domain containing 1
  
Species: Mus musculus
  
Chr. number: 11
Strand: -1
Band: D
Gene start: 94539798
Gene end: 94549255
  
Corresponding Affymetrix probe sets: 10390022 (MoGene1.0st)   1420321_at (Mouse Genome 430 2.0 Array)   1437449_at (Mouse Genome 430 2.0 Array)   1440875_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000037361
NCBI entrez gene - 237926     See in Manteia.
MGI - MGI:3039628
RefSeq - XM_011248994
RefSeq - NM_001013381
RefSeq - XM_011248992
RefSeq - XM_011248993
RefSeq - XM_006533242
RefSeq - XM_006533243
RefSeq - XM_006533244
RefSeq Peptide - NP_001013399
swissprot - Q5SUV1
Ensembl - ENSMUSG00000039096
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rsad1ENSDARG00000077698Danio rerio
 RSAD1ENSG00000136444Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR004559  Oxygen-independent coproporphyrinogen III oxidase-like
 IPR006638  Elp3/MiaB/NifB
 IPR007197  Radical SAM
 IPR010723  HemN, C-terminal
 IPR013785  Aldolase-type TIM barrel
 IPR034505  Anaerobic coproporphyrinogen-III oxidase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006779 porphyrin-containing compound biosynthetic process IEA
 biological_processGO:0055114 oxidation-reduction process IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005739 mitochondrion IDA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0004109 coproporphyrinogen oxidase activity IEA
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0051536 iron-sulfur cluster binding IEA
 molecular_functionGO:0051539 4 iron, 4 sulfur cluster binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0000702 enlarged lymph nodes "lymph nodes of increased size" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
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Allelic Composition: Rptortm2b(EUCOMM)Wtsi/Rptortm2b(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Rptortm2b(EUCOMM)Wtsi/H

Allelic Composition: Rsad1tm1.1(KOMP)Vlcg/Rsad1tm1.1(KOMP)Vlcg
Genetic Background: C57BL/6N-Rsad1tm1.1(KOMP)Vlcg/Ucd

 MP:0000706 small thymus "reduced size of the thymus" [J:36561, cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator, J:31167]
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Allelic Composition: Rptortm2b(EUCOMM)Wtsi/Rptortm2b(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Rptortm2b(EUCOMM)Wtsi/H

 MP:0001102 small superior vagus ganglion "reduced size of the upper ganglion of the vagus nerve located at the jugular foramen" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:18984]
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Allelic Composition: Rptortm2b(EUCOMM)Wtsi/Rptortm2b(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Rptortm2b(EUCOMM)Wtsi/H

 MP:0001325 abnormal retina morphology "structural or developmental anomaly of the thin layer of neural tissue lining the back of the eyeball which contains visual receptors " [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
Show

Allelic Composition: Rptortm2b(EUCOMM)Wtsi/Rptortm2b(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Rptortm2b(EUCOMM)Wtsi/H

 MP:0002768 small adrenal glands "reduced size of endocrine glands located above the kidneys responsible for hormone and epinephrine secretion" [J:78062]
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Allelic Composition: Rsad1tm1.1(KOMP)Vlcg/Rsad1tm1.1(KOMP)Vlcg
Genetic Background: C57BL/6N-Rsad1tm1.1(KOMP)Vlcg/Ucd

 MP:0005012 decreased eosinophil count "fewer than normal eosinophil numbers " [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
Show

Allelic Composition: Rptortm2b(EUCOMM)Wtsi/Rptortm2b(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Rptortm2b(EUCOMM)Wtsi/H

 MP:0005419 hypoalbuminemia "blood albumin concentration below the normal range" [MeSH:National Library of Medicine - Medical Subject Headings , 2003]
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Allelic Composition: Rsad1tm1.1(KOMP)Vlcg/Rsad1tm1.1(KOMP)Vlcg
Genetic Background: C57BL/6N-Rsad1tm1.1(KOMP)Vlcg/Ucd

 MP:0010067 increased red blood cell distribution width "higher than normal coefficient of variance (reference range) of the red blood cell volume for an organism" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", NCI:C64800 "NCI Thesaurus (Code C64800)"]
Show

Allelic Composition: Rsad1tm1.1(KOMP)Vlcg/Rsad1tm1.1(KOMP)Vlcg
Genetic Background: C57BL/6N-Rsad1tm1.1(KOMP)Vlcg/Ucd

 MP:0011110 partial preweaning lethality "the appearance of lower than Mendelian ratios of organisms of a given genotype due to death of some, but not all of the organisms between fertilization and weaning age (Mus: approximately 3-4 weeks of age)" [MGI:csmith]
Show

Allelic Composition: Rsad1tm1.1(KOMP)Vlcg/Rsad1tm1.1(KOMP)Vlcg
Genetic Background: C57BL/6N-Rsad1tm1.1(KOMP)Vlcg/Ucd

 MP:0011967 increased or absent threshold for auditory brainstem response "increase in the value at which one or more sound frequencies or broadband clicks first elicits a recordable response generated by electrical activity of neurons in the ascending auditory system, or complete lack of a recordable response at any frequency or broadband click" [MGI:csmith]
Show

Allelic Composition: Rptortm2b(EUCOMM)Wtsi/Rptortm2b(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Rptortm2b(EUCOMM)Wtsi/H

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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