ENSMUSG00000039218


Mus musculus

Features
Gene ID: ENSMUSG00000039218
  
Biological name :Srrm2
  
Synonyms : Q8BTI8 / Serine/arginine repetitive matrix protein 2 / Srrm2
  
Possible biological names infered from orthology : Q9UQ35 / serine/arginine repetitive matrix 2
  
Species: Mus musculus
  
Chr. number: 17
Strand: 1
Band: A3.3
Gene start: 23790662
Gene end: 23824741
  
Corresponding Affymetrix probe sets: 10442341 (MoGene1.0st)   1427902_at (Mouse Genome 430 2.0 Array)   1437638_at (Mouse Genome 430 2.0 Array)   1438688_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000139901
Ensembl peptide - ENSMUSP00000139842
Ensembl peptide - ENSMUSP00000139914
Ensembl peptide - ENSMUSP00000140813
Ensembl peptide - ENSMUSP00000140531
Ensembl peptide - ENSMUSP00000085993
NCBI entrez gene - 75956     See in Manteia.
MGI - MGI:1923206
RefSeq - XM_017317714
RefSeq - XM_017317708
RefSeq - XM_017317709
RefSeq - XM_017317710
RefSeq - XM_017317711
RefSeq - XM_017317712
RefSeq - XM_017317713
RefSeq - NM_175229
RefSeq - XM_006525076
RefSeq - XM_006525077
RefSeq - XM_006525078
RefSeq - XM_006525079
RefSeq - XM_011246701
RefSeq - XM_011246702
RefSeq - XM_011246704
RefSeq Peptide - NP_780438
swissprot - A0A087WRX8
swissprot - A0A087WR98
swissprot - A0A087WPU0
swissprot - A0A087WPS9
swissprot - Q8BTI8
Ensembl - ENSMUSG00000039218
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 srrm2ENSDARG00000037965Danio rerio
 SRRM2ENSG00000167978Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Srrm3 / Q80WV7 / Serine/arginine repetitive matrix protein 3 / serine/arginine repetitive matrix 3*ENSMUSG000000398606


Protein motifs (from Interpro)
Interpro ID Name
 IPR013170  mRNA splicing factor Cwf21 domain
 IPR024945  Spt5 C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008150 biological_process ND
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0015030 Cajal body IEA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0071007 U2-type catalytic step 2 spliceosome IEA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0047485 protein N-terminus binding IEA
 molecular_functionGO:0070742 C2H2 zinc finger domain binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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