ENSG00000167978


Homo sapiens

Features
Gene ID: ENSG00000167978
  
Biological name :SRRM2
  
Synonyms : Q9UQ35 / serine/arginine repetitive matrix 2 / SRRM2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 16
Strand: 1
Band: p13.3
Gene start: 2752329
Gene end: 2772538
  
Corresponding Affymetrix probe sets: 1554671_a_at (Human Genome U133 Plus 2.0 Array)   207435_s_at (Human Genome U133 Plus 2.0 Array)   208610_s_at (Human Genome U133 Plus 2.0 Array)   216629_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000461181
Ensembl peptide - ENSP00000487247
Ensembl peptide - ENSP00000484503
Ensembl peptide - ENSP00000461535
Ensembl peptide - ENSP00000301740
Ensembl peptide - ENSP00000458230
Ensembl peptide - ENSP00000458647
Ensembl peptide - ENSP00000458718
Ensembl peptide - ENSP00000458870
Ensembl peptide - ENSP00000459157
Ensembl peptide - ENSP00000460642
NCBI entrez gene - 23524     See in Manteia.
OMIM - 606032
RefSeq - NM_016333
RefSeq - XM_005255226
RefSeq - XM_006720874
RefSeq Peptide - NP_057417
swissprot - I3L1I8
swissprot - I3L1W5
swissprot - A0A140VK53
swissprot - I3L4D8
swissprot - I3L4U6
swissprot - Q9UQ35
swissprot - I3L3Q8
swissprot - A0A087X1W1
swissprot - I3L0N7
swissprot - I3L182
swissprot - I3L1C0
Ensembl - ENSG00000167978
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 srrm2ENSDARG00000037965Danio rerio
 Srrm2ENSMUSG00000039218Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SRRM3 / serine/arginine repetitive matrix 3ENSG000001776798


Protein motifs (from Interpro)
Interpro ID Name
 IPR013170  mRNA splicing factor Cwf21 domain
 IPR024945  Spt5 C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0015030 Cajal body IDA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0071007 U2-type catalytic step 2 spliceosome IDA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IDA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0047485 protein N-terminus binding IPI
 molecular_functionGO:0070742 C2H2 zinc finger domain binding IDA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000133226 SRRM1 / Q8IYB3 / serine and arginine repetitive matrix 1  / complex






 

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